YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3F10.06c
Organism:	Schizosaccharomyces pombe
Length:	453 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3F10.06c.

Description	E-value	Query Range	Subject Range
gi\|39946094, gi\|... - gi\|39946094\|ref\|XP_362584.1\| hypothetical protein MGG_08167 [Magnaporthe grisea 70-15], gb\|EAA57198....	591.0	[0..13]	[445..26]
gi\|32404838, gi\|... - gi\|32404838\|ref\|XP_323032.1\| related to 2''-O-ribosyl phosphate transferase RIT1 [MIPS] [Neurospora ... gi\|85103370 - gi\|85103370\|ref\|XP_961506.1\| hypothetical protein NCU03730 [Neurospora crassa OR74A]	576.0	[0..12]	[445..25]
gi\|556675 - gi\|556675\|emb\|CAA56770.1\| initiator tRNA phosphoribosyl-transferase [Saccharomyces cerevisiae]	564.0	[0..11]	[445..14]
gi\|42550926, gi\|... - gi\|46121505\|ref\|XP_385307.1\| hypothetical protein FG05131.1 [Gibberella zeae PH-1], gi\|42550926\|gb\|E...	550.0	[0..13]	[445..26]
gi\|16944492 - gi\|16944492\|emb\|CAC28840.2\| related to 2'-O-ribosyl phosphate transferase RIT1 [Neurospora crassa]	525.0	[0..12]	[421..25]
gi\|40742034, gi\|... - gi\|67901444\|ref\|XP_680978.1\| hypothetical protein AN7709.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	517.0	[0..13]	[397..33]
gi\|46441538, gi\|... - gi\|68472296\|ref\|XP_719709.1\| likely initiator-specific tRNA phosphoribosyl transferase [Candida albi... orf19.6727, orf1... - RIT1 CGDID:CAL0004801 Assembly 19, Contig19-10254 (27229, 28542) CDS, translated using codon table 1...	505.0	[0..11]	[444..17]
gi\|66851444, gi\|... - gi\|70998158\|ref\|XP_753808.1\| tRNA a64-2'-o-ribosylphosphate transferase [Aspergillus fumigatus Af293...	483.0	[0..13]	[445..35]
gi\|83772284 - gi\|83772284\|dbj\|BAE62414.1\| unnamed protein product [Aspergillus oryzae] gi\|220695605, gi... - gi\|238495438\|ref\|XP_002378955.1\| tRNA a64-2'-o-ribosylphosphate transferase [Aspergillus flavus NRRL... gi\|169778163 - gi\|169778163\|ref\|XP_001823547.1\| hypothetical protein [Aspergillus oryzae RIB40]	483.0	[0..13]	[445..31]

Back

Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEFDPLDAV QQIHVQARHP KNRLLSIAHD AKFVDSVIAS YPTFKPVVNE RCGTWYVNRR  60
   61 HAPISVYFKS TDGHTGQWSF SCRRLNLHLL NEITTCDGLI IVDSTRRGKR MPDALSKT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [119-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPIWIATLNK CVFERLRPHS FPNARLAFLP PFLPDTEKSS ILQRLDGFVD SLMQSGIDLD  60
   61 ALAAKLTKPI RPLWVTPASR LTSAQFEEYF TVVLVTASAQ VQNGYSREHG FLYVQGAADD 120
  121 EEEWSHGLTP EVFWQNTESI LTCPEEQLEQ KISLLLSSTR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [279-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSPTMSNSSL THLLPTPIFV GDVTGFYPPP ENTSYFVLNL SNTTLNVKNE LCFPIPSGKK  60
   61 GAPVFRKHFP SILQELNSLD PPFYERDAIF IVDEGNAKEA ASCLALMILC LYYDLHMHLL 120
  121 AHPISLSASQ SHLTKQTVRQ FLVKITELHS KTNPSRAFLL AVNSLLLSAN TIATS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits