YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC27F1.05c
Organism:	Schizosaccharomyces pombe
Length:	484 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC27F1.05c.

Description	E-value	Query Range	Subject Range
gi\|119524573, gi... - gi\|119719453\|ref\|YP_919948.1\| 4-aminobutyrate aminotransferase [Thermofilum pendens Hrk 5], gi\|11952...	337.0	[0..49]	[475..11]
ARGD_THETN - Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1 ARGD_CALS4 - Acetylornithine aminotransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 1...	337.0	[0..60]	[472..5]
gi\|89157404, gi\|... - gi\|89204777\|ref\|ZP_01183353.1\| 4-aminobutyrate aminotransferase [Bacillus weihenstephanensis KBAB4],...	334.0	[0..35]	[478..2]
gi\|47553759, gi\|... - gi\|47569576\|ref\|ZP_00240254.1\| 4-aminobutyrate aminotransferase [Bacillus cereus G9241], gi\|47553759...	334.0	[0..35]	[478..2]
gi\|42735351, gi\|... - gi\|42779435\|ref\|NP_976682.1\| 4-aminobutyrate aminotransferase [Bacillus cereus ATCC 10987], gi\|42735...	333.0	[0..35]	[478..16]
gi\|52144923, gi\|... - gi\|52144923\|ref\|YP_081906.1\| 4-aminobutyrate aminotransferase [Bacillus cereus E33L], gi\|51978392\|gb...	332.0	[0..35]	[478..2]
gi\|112418458 - gi\|112418458\|gb\|ABI18141.1\| gamma-aminobutyrate transaminase [Bacillus thuringiensis] gi\|228950866, gi... - gi\|228950866\|ref\|ZP_04112989.1\| 4-aminobutyrate aminotransferase [Bacillus thuringiensis serovar kur...	331.0	[0..31]	[474..23]
gi\|254686709 - gi\|254686709\|ref\|ZP_05150567.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. CNEVA-9066... gi\|254739066 - gi\|254739066\|ref\|ZP_05196768.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Western No... gi\|21398270 - ref\|NP_654255.1\| aminotran_3, Aminotransferase class-III [Bacillus anthracis str. A2012] gi\|254761905 - gi\|254761905\|ref\|ZP_05213754.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Australia ... gi\|254742312 - gi\|254742312\|ref\|ZP_05199998.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Kruger B] gi\|254756088 - gi\|254756088\|ref\|ZP_05208117.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Vollum] gi\|49183338, gi\|... - gi\|49183338\|ref\|YP_026590.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Sterne], gi\|4... gi\|47500740, gi\|... - gi\|47525592\|ref\|YP_016941.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. 'Ames Ancesto... gi\|30260495, gi\|... - gi\|30260495\|ref\|NP_842872.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Ames], gi\|302...	331.0	[0..35]	[478..2]
gi\|65317747 - gi\|65317747\|ref\|ZP_00390706.1\| COG0160: 4-aminobutyrate aminotransferase and related aminotransferas...	331.0	[0..35]	[478..6]
gi\|29894104, gi\|... - gi\|30018563\|ref\|NP_830194.1\| 4-aminobutyrate aminotransferase [Bacillus cereus ATCC 14579], gi\|29894... gi\|228657663, gi... - gi\|229125806\|ref\|ZP_04254832.1\| 4-aminobutyrate aminotransferase [Bacillus cereus BDRD-Cer4], gi\|228...	330.0	[0..31]	[474..23]

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Predicted Domain #1

Region A:
Residues: [1-484]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDSTSTATA TSKTVELNTN GSKTDASSEN GTASNYPEGL WCFDEAMKMD PETTVKLQLD  60
   61 HLNKLRTVHG HARNFVKADN SRFVDEKGTE HLDLIGGVGV VTVGNNNQYV WDCLQKCFDA 120
  121 KLYMMGAISY RNLAAAFGRN MALLSPGQKL TRTWTATGGA EANEGVIKLI RLATRYKPNK 180
  181 KKFLSTLNSF HGKTTGAVFL GGKEKWQKYQ SPAPFDVDYV PYGDAEALQV ALSSGMYRSF 240
  241 IVEPIQGEGG VIVPPPGYLA KARELCTKYD TYLVLDEIQT GCGRTGKFWA CEYENIIPDC 300
  301 IAFAKGFSGG LIPFAGYIAT EELWNAAYNS LETAFLHTAT YQENTLGLAA GVATIDYIVQ 360
  361 NDLLSRCRKL GGIMFDRLNK LQTKFPHVMK DVRGRGMIVG IEFYPIPESV QEEFGEYYAT 420
  421 PIVNDLADTY HVQVYCSLNN PSVFRFLPPL TIPEADLDEG LSAVESAVAK FDAKVKEAVA 480
  481 AKST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.69897
Match:	1oatA
Description:	Ornithine aminotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-aminobutyrate transaminase activity	3.63797881096751	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	2.30133284041702	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity	1.74778109525713	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.63055151623667	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.63055151623667	bayes_pls_golite062009
N-succinyltransferase activity	1.52003194822848	bayes_pls_golite062009
transferase activity	1.44093490824786	bayes_pls_golite062009
N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	1.4383564662931	bayes_pls_golite062009
glutamate decarboxylase activity	1.34215658716536	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.19150094103499	bayes_pls_golite062009
succinate-semialdehyde dehydrogenase binding	0.78144409237642	bayes_pls_golite062009
carbon-sulfur lyase activity	0.698312655247044	bayes_pls_golite062009
binding	0.605886907698173	bayes_pls_golite062009
5-aminolevulinate synthase activity	0.54326874956263	bayes_pls_golite062009
ornithine-oxo-acid transaminase activity	0.311107335626334	bayes_pls_golite062009
N-acyltransferase activity	0.2609065149092	bayes_pls_golite062009
kynureninase activity	0.242752584041108	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009
cystathionine beta-lyase activity	0.15938456446406	bayes_pls_golite062009
sulfurtransferase activity	0.0450490929307473	bayes_pls_golite062009
nucleic acid binding	0.013097682076602	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: