| Protein: | nsp1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 598 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nsp1.
| Description | E-value | Query Range |
Subject Range |
|
|
146.0 | [0..419] | [595..1671] |
|
|
136.0 | [0..378] | [597..1368] |
|
|
135.0 | [0..396] | [597..1654] |
|
|
133.0 | [0..15] | [437..347] |
|
Region A: Residues: [1-144] |
1 11 21 31 41 51
| | | | | |
1 MSFNPGNNQN SGFSFGKPAQ PNSAAQGAAT PAATGLFGNT NNNTSSTAPS GGLFGSNNAS 60
61 NTSAPSTFSF GKAATTGNST NASTSSPFSF GSTNTNNTAG AKPLFGGLGS TGSANSTGDK 120
121 SKNTASSATG AATTNPSGST FNFG
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [145-360] |
1 11 21 31 41 51
| | | | | |
1 SSNNSFNFGK PASTTNTTTP AAASTGSLFG KPAATGTTSN APPASSTSTT PATGSGGFSF 60
61 GKPASLGSTN NASTSTTANS GFSFGKPATT SAPGSNTTVT PSSSITGTND SKPAASNTGS 120
121 APTTGFSFGK PAGQAASTAT DKGTTTTSSA GTGFSFGKPA TTEDTNKPTA PNSAFTKPAT 180
181 STGDNKPTFS FGNTSKPTEN TSTTATSAPP LSNNTK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [361-598] |
1 11 21 31 41 51
| | | | | |
1 PAEGANQTSS GFSFGKPATD TTTSTSKTGP LFGNKPADPS AKPGATASTT PSEPPPSSIK 60
61 HKTLQEILNK WSTDLTTQTE VFNKLCDQVS DWDRTLVDNG ALISKLYTET VEAEQMSNRI 120
121 DDGLEYVSSS QQELFKLLDS YETQLETFDG RATSALNVER ERAFGVADDI LSRLDRLGED 180
181 LGTVINQMND FSKPDDSISE IVKVLNAQLA SLGWVENRIF QMEEKLDTIK KKNSDVLF
|
| Detection Method: | |
| Confidence: | 23.30103 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
