YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC11D3.18c
Organism:	Schizosaccharomyces pombe
Length:	498 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC11D3.18c.

Description	E-value	Query Range	Subject Range
gi\|67903516, gi\|... - gi\|67903516\|ref\|XP_682014.1\| hypothetical protein AN8745.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	238.0	[0..21]	[495..2]
gi\|67668083, gi\|... - gi\|67668083\|ref\|ZP_00465278.1\| General substrate transporter:Major facilitator superfamily [Burkhold...	235.0	[0..18]	[482..1002]
gi\|49527412 - gi\|49527412\|emb\|CAG61052.1\| unnamed protein product [Candida glabrata] gi\|50291337, gi\|... - gi\|50291337\|ref\|XP_448101.1\| unnamed protein product [Candida glabrata], gi\|49527412\|emb\|CAG61052.1\|...	225.0	[0..6]	[483..66]
gi\|85110133 - gi\|85110133\|ref\|XP_963279.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28924953, gi\|... - gi\|32417950\|ref\|XP_329453.1\| hypothetical protein [Neurospora crassa], gi\|28924953\|gb\|EAA34043.1\| hy...	220.0	[0..19]	[498..340]
gi\|119189209, gi... - gi\|90303997\|gb\|EAS33628.1\| hypothetical protein CIMG_04652 [Coccidioides immitis RS], gi\|119189209\|r...	219.0	[0..11]	[498..734]
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb... SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...	217.0	[0..2]	[496..41]
gi\|169764102 - gi\|169764102\|ref\|XP_001727951.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83770979 - gi\|83770979\|dbj\|BAE61112.1\| unnamed protein product [Aspergillus oryzae]	212.0	[0..3]	[492..154]
gi\|68465998, gi\|... - gi\|68465998\|ref\|XP_723067.1\| sugar transporter-like protein [Candida albicans SC5314], gi\|68465705\|r... orf19.6005, orf1... - HGT5 CGDID:CAL0005021 Assembly 19, Contig19-10236 (305167, 302933) CDS, reverse complemented, transl...	210.0	[0..55]	[495..188]

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Predicted Domain #1

Region A:
Residues: [1-498]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQSEYKIS KDDEHSIYAS EINKEKLQNT ASPDVDYGDT ASLKIDPKVE KKLLLKMDLV  60
   61 ISPIIGFLYL MAFLDRSNIG NAAVAGMTEA LSLYGERLNV AVSIFYVLYI LVETPSVVLV 120
  121 KRIKASRMLA FISFAWSMTV LFSGFMSSYG GLIATRLILG LLEGCLFPAL NLYLTTHYTR 180
  181 KEQCQRLSYL FASAGLAGAF GGLFAYALEQ VHAGNKEGWQ WIYIVEGLVS FIGVPLCLFA 240
  241 LPDKMENAWF LTREEREVAI IRRDINARYH GEQHFEWSEV RKAFKDPKVY VSATSQFCAD 300
  301 MVLYGFSSFL PVIIKGLGFV GLQTNYMTIP VYIAGVISFL FVAWLSDRTQ LRAVYLISAS 360
  361 TVVAVGYIIM LASDSNAAKY TATYIIAIGC YIGPGLNLGW LNNNVAGHYK RATAIGIQQT 420
  421 LANSSGIVAG QIYRSKNAPK YILGNAFTLG CVIVGGLAYV VMFFSLRYVN KKRDERCARG 480
  481 EFDPSAIGDF ADDFRYYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.46247398538901	bayes_pls_golite062009
ion transmembrane transporter activity	4.58978526526921	bayes_pls_golite062009
transporter activity	4.09176719149278	bayes_pls_golite062009
anion transmembrane transporter activity	3.94605227012838	bayes_pls_golite062009
cation transmembrane transporter activity	3.88180006470231	bayes_pls_golite062009
substrate-specific transporter activity	3.59744164024479	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	2.52916479889426	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.15783210522667	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
polyol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
binding	0.873217664940684	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.812001619402678	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
phosphate transmembrane transporter activity	0.312628600969375	bayes_pls_golite062009
cation:sugar symporter activity	0.143419068761182	bayes_pls_golite062009
sugar:hydrogen symporter activity	0.143419068761182	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: