| Protein: | cip2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 576 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cip2.
| Description | E-value | Query Range |
Subject Range |
|
|
293.0 | [0..59] | [541..1] |
|
|
292.0 | [0..59] | [576..1] |
|
|
291.0 | [0..59] | [576..1] |
|
Region A: Residues: [1-126] |
1 11 21 31 41 51
| | | | | |
1 MAEGTSQRPL TPLSQAFLST NTLSPASSPL TFHSEAASLR RKRSNFFPKL DELNGAQDEE 60
61 MRGLNIPGGS GYLENRYGRD KFTFSDAAVN SAGMGGSGIF SHNNADDGLG DGSSTVLPSS 120
121 LKQMLD
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [127-221] |
1 11 21 31 41 51
| | | | | |
1 PEISTANNPS AKPRRTRLQT AWKEATNSAG LSLRSASALD VLKNSGPATT SLLSSTTYPF 60
61 DSLNAFNEPS HSHVPNSASS TALSRGMSNS VTLTA
|
| Detection Method: | |
| Confidence: | 32.39794 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.63987691433124 | bayes_pls_golite062009 |
| nucleic acid binding | 4.05055109233024 | bayes_pls_golite062009 |
| mRNA binding | 3.54495985180603 | bayes_pls_golite062009 |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| 1.35163561991147 | bayes_pls_golite062009 | |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 0.884269546056316 | bayes_pls_golite062009 |
| DNA binding | 0.841333741555926 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.544292786424842 | bayes_pls_golite062009 |
| transcription factor activity | 0.182209144070426 | bayes_pls_golite062009 |
|
Region A: Residues: [222-433] |
1 11 21 31 41 51
| | | | | |
1 PPEPDEETIP TAIVIKNIPF SLKKEVLFKV FTALDIPRPY AFNYHFDNGV FRGLAFANFH 60
61 SPEEAKTVVQ VLNGYEITGR RLRVEWKRQL PPAERERVER GKQEKRAVEE RKNQLKSPFS 120
121 VANIGAGIDF DLNDPAILNV YSHILLFYYR SDNTNDLVFD SSTTQEERRV AALLASRLNL 180
181 NHSVTGDGEA KQVVITMPST HFTPANNSSA NH
|
| Detection Method: | |
| Confidence: | 40.522879 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.63987691433124 | bayes_pls_golite062009 |
| nucleic acid binding | 4.05055109233024 | bayes_pls_golite062009 |
| mRNA binding | 3.54495985180603 | bayes_pls_golite062009 |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| 1.35163561991147 | bayes_pls_golite062009 | |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 0.884269546056316 | bayes_pls_golite062009 |
| DNA binding | 0.841333741555926 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.544292786424842 | bayes_pls_golite062009 |
| transcription factor activity | 0.182209144070426 | bayes_pls_golite062009 |
|
Region A: Residues: [434-576] |
1 11 21 31 41 51
| | | | | |
1 SPLMAPNAST LNPSSLGASN LSQPSLANHL SSSGLFDNGL FSSGGLSSNF SSLRRPAPSM 60
61 HLADSIRSLR GLNDSKAFSD IRSMPATPLE LATPFANLNV SSPLDRNATN SSNTLNGSAM 120
121 NDYFASLTPS NTGAIGSRTF TKN
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
