YRC Public Data Repository - Protein Structure Prediction

Protein:	ayr1
Organism:	Schizosaccharomyces pombe
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ayr1.

Description	E-value	Query Range	Subject Range
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	239.0	[0..4]	[253..5]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	237.0	[0..1]	[253..1]
gi\|146296617, gi... - gi\|82501013\|ref\|ZP_00886394.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Caldicellulosiruptor sacc...	236.0	[0..4]	[253..6]
gi\|115250215, gi... - gi\|126698778\|ref\|YP_001087675.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile 6... gi\|255306086 - gi\|255306086\|ref\|ZP_05350258.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile AT... gi\|255100197 - gi\|255100197\|ref\|ZP_05329174.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC...	235.0	[0..3]	[253..5]
gi\|255313843 - gi\|255313843\|ref\|ZP_05355426.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255516524 - gi\|255516524\|ref\|ZP_05384200.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255649624 - gi\|255649624\|ref\|ZP_05396526.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|254974717 - gi\|254974717\|ref\|ZP_05271189.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255092105 - gi\|255092105\|ref\|ZP_05321583.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile CI... gi\|90575404, gi\|... - gi\|90575404\|ref\|ZP_01231888.1\| hypothetical protein CdifQ_02001165 [Clostridium difficile QCD-32g58]...	234.0	[0..3]	[253..5]
gi\|168210762, gi... - gi\|170711222\|gb\|EDT23404.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens B st... gi\|110675446, gi... - gi\|110800799\|ref\|YP_695772.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens A... gi\|170660709, gi... - gi\|170660709\|gb\|EDT13392.1\| 3-oxoacyl- reductase [Clostridium perfringens E str. JGS1987], gi\|168207...	234.0	[0..1]	[253..1]
gi\|110803752, gi... - gi\|110803752\|ref\|YP_698460.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens S...	233.0	[0..1]	[253..1]
gi\|91184216, gi\|... - gi\|91217712\|ref\|ZP_01254669.1\| putative 3-oxoacyl-[acyl-carrier protein] reductase [Psychroflexus to...	232.0	[0..4]	[253..13]
gi\|20806584 - gi\|20806584\|ref\|NP_621755.1\| Dehydrogenase with different specificities (related to short-chain alco... gi\|20806584, gi\|... - gi\|20806584\|ref\|NP_621755.1\| dehydrogenase [Thermoanaerobacter tengcongensis MB4], gi\|20515027\|gb\|AA...	231.0	[0..1]	[254..1]
gi\|241883624, gi... - gi\|241903980\|ref\|ZP_04788693.1\| short-chain dehydrogenase/reductase SDR [Thermoanaerobacter brockii ... gi\|166857404, gi... - gi\|76795531\|ref\|ZP_00777904.1\| Short-chain dehydrogenase/reductase SDR [Thermoanaerobacter ethanolic...	228.0	[0..1]	[254..1]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEKFVLIT GCSEGGIGNA LALKFHQEGF QVLATARQVE RMDNLTKAGL QTLKLDVTDE  60
   61 DSVREVEQEV RKFTNGSLHY LINNAGAPCS APAIDLDIED VSKVMDVNFY GVIRMNKAFQ 120
  121 HQLIRAKGTI VNVNSLVSYV PFAFNAAYNA SKAALLAYSN TLRIELAPFG VQVTSIMTGG 180
  181 VQTKIQSKPL GTMTEAAIPE NSIYYPYRKL ILENRNPVEK FVTIEEFADA AYPQLVGRGR 240
  241 WYQLFKPGVR PAQIWAGYMS SAGRVGSMLP VEVFSMSVRL IVKLPSTAVW RDHTVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.154902
Match:	2p68A
Description:	No description for 2p68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits