YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC4G8.08
Organism:	Schizosaccharomyces pombe
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4G8.08.

Description	E-value	Query Range	Subject Range
gi\|108879780, gi... - gi\|157106714\|ref\|XP_001649449.1\| small calcium-binding mitochondrial carrier, putative [Aedes aegypt...	267.0	[0..1]	[269..207]
gi\|114674911 - gi\|114674911\|ref\|XP_524071.2\| PREDICTED: solute carrier family 25, member 23 [Pan troglodytes]	262.0	[0..1]	[269..365]
FBpp0304400, CG3... - This gene is referred to in FlyBase by the symbol Dmel\CG32103 (CG32103, FBgn0052103). It is a prote...	256.0	[0..1]	[269..284]
gi\|109123108 - gi\|109123108\|ref\|XP_001088055.1\| PREDICTED: similar to solute carrier family 25 (mitochondrial carri...	255.0	[0..1]	[269..231]
SLC25A23 - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	254.0	[0..1]	[269..184]
gi\|58388785, gi\|... - gi\|58388785\|ref\|XP_316535.2\| ENSANGP00000009995 [Anopheles gambiae str. PEST], gi\|55239275\|gb\|EAA114...	253.0	[0..1]	[269..61]
SCM2A_DANRE - Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1	252.0	[0..1]	[269..185]

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Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVQTLMAAS AGAVASRLLC HPIDTITVHK QTIGKFSFKT MPLKAYYRGL PISLTLITPA  60
   61 TCLYLSTYVE AKRRFKPSVG EGAILYSICG MTAEVVSSFV WTPLEVIKAR TQISQKGSVI 120
  121 NTISTLARSE GLKGFYRGYW MGVAIYLPTT VSWWVCYEES KKYLQKQSNW DISVIAPICS 180
  181 ALGTVVATTI STPLDIVKTR YQVATSSAMR KAEYGLQAEK ELGILEIAKL LFSKHGVKGF 240
  241 TRGLFTRMCY IMPSGMISMS VFESFKSKDI D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits