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View Structure Prediction Details

Protein: SPAC4G8.04
Organism: Schizosaccharomyces pombe
Length: 772 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4G8.04.

Description E-value Query
Range
Subject
Range
tbc-2 - status:Partially_confirmed UniProt:Q23419 protein_id:AAC71091.2
386.0 [0..10] [766..134]
gi|39596970, gi|... - gi|39596970|emb|CAE59197.1| Hypothetical protein CBG02508 [Caenorhabditis briggsae], gi|187037352|em...
gi|157751962 - gi|157751962|ref|XP_001679693.1| Hypothetical protein CBG02508 [Caenorhabditis briggsae AF16]
372.0 [0..10] [766..133]
gi|119579290, gi... - gi|55957444|emb|CAI13883.1| TBC1 domain family, member 2 [Homo sapiens], gi|55663618|emb|CAH71884.1|...
366.0 [0..96] [770..16]
gi|114625797 - gi|114625797|ref|XP_001158196.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
364.0 [0..96] [770..16]
gi|109110830 - gi|109110830|ref|XP_001113411.1| PREDICTED: TBC1 domain family, member 2 isoform 5 [Macaca mulatta]
349.0 [0..96] [770..232]
gi|74227954 - gi|74227954|dbj|BAE37970.1| unnamed protein product [Mus musculus]
345.0 [0..32] [771..2]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPSVSDSSV YLSSAPTKPI ASGSVATGID SMPSKVDITP CDLLENSKSS APLFVECNQE  60
   61 SLHSIPGSLH LVPDASIERL IEKHGAVNLL RQLAKDVAER DSFISDLKFH FESREYVFRE 120
  121 LLREHGLDPV LANTKLSQRH SASFFPSSQE PSIPENPSSL TGEKPHLYAR ID

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [173-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAINEPFTPS DRLSPSSLVP LLKLPALDHA VSSSSSSDLP SDPNSASYIA SSKQKASSLK  60
   61 LTSSLKKFYS WTSSSSLQHT RENLHDSTSS LRDHDPSLLS SSKFFRSSPR CSTPSVSSTF 120
  121 VSATSEPEVE TYSVSTKNS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSNKNLRSSL SKLLSTSNLN NKPLSLSSTA PSMPSIGSVE LGNMIPKETQ PPSMRNDWKD  60
   61 YLDNNSKEIL DQFGFLQKRP SHDTPLCPED IKLNQKQTLS FYE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [415-772]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNYGLVDDFF GNELDGLNDS PLLLNKKDIL LDMKESTRQK NWSLFFQRLY KKYKITDEDT  60
   61 IGLLGISSIG VKGRHGKKRW HKFRELVKNG VPLCYKAKVW LECSGAYQLH SPGYYEELLS 120
  121 RTDEVESASV AQIDMDINRT MAKNVFFGGK GPGIPKLRRI LVAYSRHNPH IGYCQGMNVI 180
  181 GAFLLLLYAS EEDAFYMLMS IIENVLPPKY FTPDLMTSRA DQLVLKSFVK ESLPEIYSHL 240
  241 ELLGVDLDAI SFHWFLSVYT DTLPTNISFR IFDMLFCDGY VCLFRVALTI LKSLKQQILA 300
  301 CNSSSAIYSF LSDLVQYSFQ PDSFIKEAAD RWSKLVTEKS IERKRNLAIS SLNLAVNY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.221849
Match: 2qq8A
Description: No description for 2qq8A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle