| Protein: | gef2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1101 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gef2.
| Description | E-value | Query Range |
Subject Range |
|
|
531.0 | [0..108] | [995..112] |
|
|
513.0 | [0..108] | [968..112] |
|
|
434.0 | [0..148] | [968..158] |
|
|
416.0 | [0..219] | [859..1243] |
|
|
405.0 | [0..219] | [859..260] |
|
|
405.0 | [0..219] | [859..1270] |
|
|
402.0 | [0..219] | [859..1292] |
|
Region A: Residues: [1-85] |
1 11 21 31 41 51
| | | | | |
1 MDVGTMGSRA ELLAISIQFG GLWVFRDLLQ MNPLFEQDHV FCTFNHPNMG LVLISFAKVD 60
61 GHILAAYALS KLGPDTFSIC YPFSS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [86-611] |
1 11 21 31 41 51
| | | | | |
1 KLDAFAQTLD LEWQIASMHK EAAACVYEFL CVESVCLHTG ENWRESVIEP EYASYIFDTI 60
61 NVFQSSSLTR ELYSLGEPNG VREFVVDAIF DIKVDNSWWE DPSNSYWKTV IGSREMFEDS 120
121 RKKTSSPSPS FASSKDAGTI PAIQKKKSLL IEMMETESTY VERLRHLVND YALPLRDLAK 180
181 SSKKLLGLYE LNTLFPPCLN KLIQLNSAFL DEFEAIMSDL NFEDIDEKKF EEIDLRLACC 240
241 FESHFFAFSQ HYPRYLEQSN DFGNVLKMAS KIPKFVEFHD QVKLNANMNV GLSQLIMEPV 300
301 QRIPRYSLFL DQIILLTQEG ECQHTYVRSV EIIKNIAEMP TVDAEERSRI FAGLQHIIPD 360
361 LAPNMISNSR NFIDCIDVTR EFLKNGQLHL IPYTLILFND RICLVQRRSK SSIASTILDL 420
421 RKQNPRNSYS KEKRAQYIGS NMNEAVELTR SMVEENTIFL ISKYASSPSF FNEYPILKFR 480
481 CDFENVRTMD RFYQSFQKAL SMNKSQPSCL SFSKLNDFVV FFNNYS
|
| Detection Method: | |
| Confidence: | 63.0 |
| Match: | 2pz1A |
| Description: | No description for 2pz1A was found. |
|
Region A: Residues: [612-685] |
1 11 21 31 41 51
| | | | | |
1 RFEYEKESKR SDIVCICTND ANVDKHKFLQ DGNIVITFFQ QDEDFHLSFD SWLGVSLPTE 60
61 AVIAKEDLRE ACLN
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1u3oA |
| Description: | Solution structure of rat Kalirin N-terminal SH3 domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [686-844] |
1 11 21 31 41 51
| | | | | |
1 YLINIKRLLL CPFSNRNFSS LDLYSNLIQH LLSANSSPRK SRLSFGGRPG SPSKISLSLN 60
61 RFYNQGGLSK SCATLPSQMY NLDHNNISQK SLKFNTHNTS KASAEKTVEH LEAFKGGFKY 120
121 HTDLKNLLYP LSEKEKIEGD ELYDNILKET FNEELLSHY
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [845-978] |
1 11 21 31 41 51
| | | | | |
1 PPNIIYATFQ KYLSSFINRK FGVLLSSSFI QQLNTVENLN LSFNSTDAVY HLKKILQDLP 60
61 ESSLKILENI FSIASDLLLR LPLKDQCDFV TKQLAIALAP SMFGSNAVEL VYYLAYHSDR 120
121 IFGTVEELPT PVSP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.802 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.802 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.779 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.769 | a.26.1 | 4-helical cytokines |
| View | Download | 0.761 | a.22.1 | Histone-fold |
| View | Download | 0.759 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.759 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.759 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.702 | a.118.8 | TPR-like |
| View | Download | 0.684 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.412 | a.1.1 | Globin-like |
| View | Download | 0.402 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.390 | d.110.4 | SNARE-like |
| View | Download | 0.336 | d.110.4 | SNARE-like |
| View | Download | 0.329 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
|
Region A: Residues: [979-1101] |
1 11 21 31 41 51
| | | | | |
1 ANSNNDKQLD ESKFQAIAMK EMPERHPKEI LPGQIEREAY EDLRRKYHLT LARLAQMTRL 60
61 NEDSKKSIPL LYDRFNHDLK LIKQSVQASL IRKQCELDTA KWTLEEYESK LNAKEGCQTN 120
121 IFI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.784 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.632 | a.1.1 | Globin-like |
| View | Download | 0.575 | a.63.1 | Apolipophorin-III |
| View | Download | 0.571 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.557 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.538 | a.63.1 | Apolipophorin-III |
| View | Download | 0.491 | a.1.1 | Globin-like |
| View | Download | 0.485 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.212 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
