YRC Public Data Repository - Protein Structure Prediction

Protein:	snf5
Organism:	Schizosaccharomyces pombe
Length:	632 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snf5.

Description	E-value	Query Range	Subject Range
gi\|49106525, gi\|... - gi\|67900620\|ref\|XP_680566.1\| hypothetical protein AN7297.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	548.0	[0..35]	[624..136]
gi\|42554158, gi\|... - gi\|46125153\|ref\|XP_387130.1\| hypothetical protein FG06954.1 [Gibberella zeae PH-1], gi\|42554158\|gb\|E...	503.0	[0..32]	[624..50]
gi\|66853659, gi\|... - gi\|71002680\|ref\|XP_756021.1\| SWI-SNF complex subunit (Snf5) [Aspergillus fumigatus Af293], gi\|668536... gi\|159130074 - gi\|159130074\|gb\|EDP55188.1\| SWI-SNF complex subunit (Snf5), putative [Aspergillus fumigatus A1163]	492.0	[0..25]	[624..127]
gi\|39976825, gi\|... - gi\|39976825\|ref\|XP_369800.1\| hypothetical protein MG06315.4 [Magnaporthe grisea 70-15], gb\|EAA56344....	481.0	[0..33]	[624..85]
gi\|114187813, gi... - gi\|115385639\|ref\|XP_001209366.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	472.0	[0..32]	[624..119]
gi\|90298608, gi\|... - gi\|90298608\|gb\|EAS28239.1\| hypothetical protein CIMG_09443 [Coccidioides immitis RS], gi\|119175059\|r...	442.0	[0..25]	[623..133]
gi\|40882158, gi\|... - gi\|40882158\|emb\|CAF05985.1\| related to transcription factor snf5p [Neurospora crassa], gi\|32403788\|r... gi\|85081267 - gi\|85081267\|ref\|XP_956685.1\| hypothetical protein NCU00421 [Neurospora crassa OR74A]	432.0	[0..33]	[601..77]
SNF5 - Subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; function... SNF5_YEAST - SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	412.0	[0..27]	[550..335]
gi\|88183855, gi\|... - gi\|88183855\|gb\|EAQ91323.1\| hypothetical protein CHGG_03258 [Chaetomium globosum CBS 148.51], gi\|1162...	387.0	[0..7]	[624..49]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKDIGSAVA ELQVCSTHYA MTIVSCGFHS PQSLMNADLQ HCLLADQNYL LNNSNKNKGS  60
   61 IIEENTRKPF QSARNLQTSL KTHPESAITR YGLGYAGFGN GWTALKPKIL FPSQKRRVKG 120
  121 RFTFPFSRRS NLAQSKLPVD LVPIRLEIDA DRYKLRDSFT WNLYDKCISL DQFAEQICID 180
  181 YDIPLHNVHI VQNISKSIQA QINDYEPRKA QSNLSFVSDV SSSTSETVYA HEPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [235-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSLAKASKQQ IPTVQNDLRI LIKLDITIGR LNLIDQFEWN LFAPESSAEE FATVMCLDLG  60
   61 LSGEFCTAVA HSIREQCQMY IKYLSLIGYL FDGSEIEDEE VRSYILPPLK NTLRFSDMES 120
  121 SSFAPMIYEL NDAEMERQDR GYDREARRMR RRQGRAKH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [393-632]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIMLPDLRDI PKIHRSLFPS SSVPSDDDFM HALSLSTNSD GETLNEINTN NPEREHLIVR  60
   61 LKVDSQKLKI IVEQSQTLTL NNFQQRKLTP LPNSMSFDSL NEFESERNTP STYGQNISPL 120
  121 PQFSSPSLSS DAFLTNSNSS ESALVHMQKL NLPDFTPSWV KRCVIETFAK FPNDRFNVIV 180
  181 KPALNPAERM TVRICCHDCI NEYFTAGPGF TFGNFHIHLL SSSHQQKKEV RMNTVLDRNT 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits