YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC30B4.06c
Organism:	Schizosaccharomyces pombe
Length:	666 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC30B4.06c.

Description	E-value	Query Range	Subject Range
MNMG_VIBPA - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Vibrio parahaemolyticus serotype... GIDA_VIBPA, MNMG... - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Vibrio parahaemolyticus GN=mnmG ...	791.0	[0..11]	[647..1]
MNMG_VIBVY - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Vibrio vulnificus (strain YJ016)...	787.0	[0..11]	[646..1]
gi\|193071616, gi... - gi\|75214824\|ref\|ZP_00713309.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio...	787.0	[0..11]	[642..1]
MNMG_VIBVU, GIDA... - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Vibrio vulnificus GN=mnmG PE=3 S... MNMG_VIBVU - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Vibrio vulnificus (strain CMCP6)...	787.0	[0..11]	[646..1]
gi\|208727143, gi... - gi\|208807342\|ref\|ZP_03249679.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Es... MNMG_ECO57 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O157:H7 GN=mnmG... gi\|12518598, gi\|... - gi\|15804341\|ref\|NP_290380.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Esche... gi\|195936368 - gi\|195936368\|ref\|ZP_03081750.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Es... gi\|189373258, gi... - gi\|189373258\|gb\|EDU91674.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Escher... gi\|189358928, gi... - gi\|189358928\|gb\|EDU77347.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Escher... gi\|217326532, gi... - gi\|217326532\|ref\|ZP_03442616.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Es... gi\|15833937, gi\|... - gi\|15833937\|ref\|NP_312710.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Esche... MNMG_ECO5E - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O157:H7 (strain... gi\|208735700, gi... - gi\|208814423\|ref\|ZP_03255752.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Es... gi\|254595147, gi... - gi\|254795747\|ref\|YP_003080584.1\| glucose-inhibited cell-division protein [Escherichia coli O157:H7 s... gi\|209753798, gi... - pir\|\|D86060 glucose-inhibited division protein gidA [similarity] - Escherichia coli (strain O157:H7,...	787.0	[0..11]	[642..1]
gi\|226838925, gi... - gi\|254038960\|ref\|ZP_04873012.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG [Es... MNMG_ECOBW - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain K12 / M... gi\|227883963, gi... - gi\|227883963\|ref\|ZP_04001768.1\| glucose inhibited cell division protein A [Escherichia coli 83972], ... MNMG_ECOLC - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain ATCC 87... MNMG_ECODH - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain K12 / D... EG10375 - 5-methylaminomethyl-2-thiouridine modification at tRNA U34 / 5-methylaminomethyl-2-thiouridine modif... MNMG_ECO24 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O139:H28 (strai... MNMG_ECOSE - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain SE11) G... MNMG_ECOHS - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O9:H4 (strain H... MNMG_ECO8A - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O8 (strain IAI1... gi\|194428129, gi... - gi\|75210649\|ref\|ZP_00710790.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio... MNMG_ECO81 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O81 (strain ED1... gi\|191170517, gi... - gi\|75242471\|ref\|ZP_00726215.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio... MNMG_ECO55 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain 55989 /... gi\|75258280, gi\|... - gi\|75258280\|ref\|ZP_00729728.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio... MNMG_ECO7I - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O7:K1 (strain I... gi\|188488625, gi... - gi\|75514193\|ref\|ZP_00736501.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio... MNMG_ECOLU - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O17:K52:H18 (st... MNMG_SHIBS - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Shigella boydii serotype 4 (stra... gi\|89110266, gi\|... - gi\|89110266\|ref\|AP_004046.1\| glucose-inhibited cell-division protein [Escherichia coli str. K-12 sub... GIDA_ECOLI - tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA (Glucose-inhibited division protein... EG10375 - 5-methylaminomethyl-2-thiouridine modification at tRNA U34 / 5-methylaminomethyl-2-thiouridine modif... GIDA_ECOL6, MNMG... - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O6 GN=mnmG PE=3... MNMG_ECOL6 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O6:H1 (strain C... gi\|124530045, gi... - gi\|124530045\|ref\|ZP_01700828.1\| glucose inhibited division protein A [Escherichia coli B], gi\|124499... MNMG_ECOL5 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O6:K15:H31 (str...	787.0	[0..11]	[642..1]
gi\|254163692, gi... - gi\|254163692\|ref\|YP_003046800.1\| glucose-inhibited division protein A [Escherichia coli B str. REL60... gi\|83588394, gi\|... - gi\|83588394\|ref\|ZP_00927018.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio... gi\|253326668, gi... - gi\|254290443\|ref\|YP_003056191.1\| glucose-inhibited division protein A [Escherichia coli BL21(DE3)], ... gi\|242379279, gi... - gi\|251787006\|ref\|YP_003001310.1\| hypothetical protein B21_03569 [Escherichia coli BL21], gi\|24237927...	786.0	[0..11]	[642..1]
gi\|237703542, gi... - gi\|237703542\|ref\|ZP_04534023.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG [Es... MNMG_ECOUT - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain UTI89 /... MNMG_ECO45 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O45:K1 (strain ... MNMG_ECOK1 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O1:K1 / APEC GN...	786.0	[0..11]	[642..1]
gi\|86147165, gi\|... - gi\|86147165\|ref\|ZP_01065481.1\| glucose-inhibited division protein A [Vibrio sp. MED222], gi\|85835049...	786.0	[0..11]	[646..1]
MNMG_SHISS - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Shigella sonnei (strain Ss046) G...	785.0	[0..11]	[642..1]

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Predicted Domain #1

Region A:
Residues: [1-417]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRTTKRYFC TSFNRRKNVV VIGGGHAGVE AAAAASRLGA KTTLLTKSFD NIGQMSCNPA  60
   61 FGGIGKGTLM REIDALGGVV SGVCDESAIQ FHMLNRSNGP AVWSPRAQMD RSVFKKNMQK 120
  121 TISTYRKNLQ VREGAAVSIN VLTEDDGKQV CDSIVLEDGT AIPASCIVIT TGTFLGGQIN 180
  181 VGLTQLAAGR YGERPSLPLS KCLSNLGFKM GRLKTGTPPR LSSPINISKM TEQTGDEIPE 240
  241 TFSFLNLERD FSPALPQRSC YRTYTTELTH EIVRKNLAFA PHMLAGDILS PRYCPSLEAK 300
  301 VTRFPHKARH LIWLEPEGLD PNSWWYPNGL SNSMPEEIQH NIIRSIPGLE NCNIVRPAYG 360
  361 VMYDYVIPTQ LKATLETKKI QGLYLAGQIN GTTGYEEAAA QGILAGLNAG LSALGRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	2i0zA
Description:	No description for 2i0zA was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	4.24087829378489	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	2.84060092432585	bayes_pls_golite062009
catalytic activity	1.56773888754354	bayes_pls_golite062009
antioxidant activity	1.49429830917872	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.39990343076756	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.14701726867934	bayes_pls_golite062009
binding	0.400596507621048	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	0.36771673037999	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.187016999137115	bayes_pls_golite062009
protein binding	0.139858531143419	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [418-666]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVDIPRNTAL LGVMVDDLIT KGVKEPYRVF TSRSEYRLTT RADNADLRLT PLAQSIGLLD  60
   61 DQTHWESFQR TKSLLDFSNK IAKEFILSPQ QWSKLGMPIP NDGKYRSAWD LLSFTNLDLF 120
  121 CVISCIPKLK DIPKRVLQRL IIEGKYTYYI KRQGTQNKQL NCRDESTVIP SDFDFDTLHS 180
  181 VSAEELMLLK TIRPATIGQL KRIQGIKPGT IIRLLRHTYY NPAKEAWLRK VYMPMYDMHS 240
  241 SEENQSTNL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: