YRC Public Data Repository - Protein Structure Prediction

Protein:	vma10
Organism:	Schizosaccharomyces pombe
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vma10.

Description	E-value	Query Range	Subject Range
gi\|109498722 - gi\|109498722\|ref\|XP_001065881.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit G, isofor...	134.0	[0..4]	[108..107]
VATG1_BOVIN - V-type proton ATPase subunit G 1 OS=Bos taurus GN=ATP6V1G1 PE=1 SV=3	111.0	[0..3]	[108..2]
gi\|109149627, gi... - gi\|109149627\|ref\|XP_001084453.1\| PREDICTED: similar to vacuolar H+ ATPase G1 [Macaca mulatta], gi\|10... CCDS6807.1_1 - null	111.0	[0..3]	[108..2]
VATG1_MOUSE - V-type proton ATPase subunit G 1 OS=Mus musculus GN=Atp6v1g1 PE=1 SV=3	111.0	[0..3]	[108..2]
ATP6V1G1 - ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 gi\|55632251 - gi\|55632251\|ref\|XP_528400.1\| PREDICTED: similar to vacuolar H(+)-ATPase subunit isoform 2 [Pan trogl...	109.0	[0..3]	[108..2]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQTNSGIQ QLLEAEKVAR NIVEKARQHR TQRLKDARLE AKREIDEYAS KKEEEFKKSE  60
   61 SQASGIYSQA EAESKKQVQD TFASIETSSQ KNSDKVVDAI LSITCNVK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.468521
Match:	PF03179.6
Description:	No description for PF03179.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.919	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits