YRC Public Data Repository - Protein Structure Prediction

Protein:	vma2
Organism:	Schizosaccharomyces pombe
Length:	503 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vma2.

Description	E-value	Query Range	Subject Range
ATPB_AGAAF - ATP synthase subunit beta, chloroplastic OS=Agapanthus africanus GN=atpB PE=3 SV=1	590.0	[0..7]	[502..3]
gi\|6687548 - gi\|6687548\|emb\|CAB64990.1\| ATP synthase beta subunit [Erithalis fruticosa]	587.0	[0..7]	[502..3]
gi\|110456611 - gi\|110456611\|gb\|ABG74738.1\| ATPase beta subunit [Forsythia europaea]	586.0	[0..7]	[502..3]
gi\|62184048 - gi\|62184048\|gb\|AAX73335.1\| ATP synthase beta subunit [Banksia quercifolia]	585.0	[0..7]	[502..3]
gi\|6687625 - gi\|6687625\|emb\|CAB65027.1\| ATP synthase beta subunit [Griselinia littoralis]	585.0	[0..8]	[502..4]
gi\|14718068 - gi\|14718068\|gb\|AAK72775.1\| ATP synthase beta subunit [Griselinia lucida]	585.0	[0..8]	[502..1]
gi\|6687278 - gi\|6687278\|emb\|CAB64899.1\| ATP synthase beta subunit [Cephalanthus occidentalis]	585.0	[0..8]	[502..4]
gi\|6687120 - gi\|6687120\|emb\|CAB64831.1\| ATP synthase beta subunit [Cajophora acuminata]	585.0	[0..7]	[502..3]
ATPB_CASSA - ATP synthase subunit beta, chloroplastic OS=Castanea sativa GN=atpB PE=3 SV=1	585.0	[0..7]	[501..3]
gi\|6686771 - gi\|6686771\|emb\|CAB64690.1\| ATP synthase beta subunit [Alseuosmia macrophylla]	584.0	[0..8]	[502..4]

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Predicted Domain #1

Region A:
Residues: [1-503]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLFDINAA AAVKDYSIKP RLSYNTVNSI TGPLVILDNI RRPQYNEIVN LNLPDGSVRS  60
   61 GQVLEVAGHK AIVQVFEGTS GVDVRKTTID FTGHSMRIPV SEDMLGRVFN GSGLPIDKGP 120
  121 NLLAEDYLDI NGSPINPYAR IYPEEMIQTG ISSIDGLNSI ARGQKIPIFS AAGLPHNEIA 180
  181 AQICRQAGLV KRPTKDVHDG HEDNFSIVFA AMGVNLETAR FFQRDFEENG SFERVTLFLN 240
  241 LANDPTIERI ITPRLALSAS EFLAYQTEKH VLTILTDMTS YADALREVSA AREEVPGRRG 300
  301 YPGYMYTDLS TIYERAGRVE GRNGSITQIP ILTMPNDDIT HPIPDLTGYI TEGQIFVDRQ 360
  361 LHNNAIYPPI NVLPSLSRLM KSAIGEGMTR NDHGDVSNQL YAMYAIGRDA ASMKSVVGEE 420
  421 ALSQEDRLAL EFLGKFEKTF ISQGAYENRT IFETLDLAWS LLRIFPREML TRIPKKILDQ 480
  481 YYSRSSAYTE SSKDVIDNTP ESS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	2c61A
Description:	No description for 2c61A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits