YRC Public Data Repository - Protein Structure Prediction

Protein:	vma1
Organism:	Schizosaccharomyces pombe
Length:	619 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vma1.

Description	E-value	Query Range	Subject Range
gi\|190405181 - gi\|190405181\|gb\|EDV08448.1\| vacuolar ATP synthase catalytic subunit A [Saccharomyces cerevisiae RM11... gi\|3417405 - gi\|3417405\|emb\|CAA98761.1\| TFP1 [Saccharomyces cerevisiae]	561.0	[0..1]	[619..1]
gi\|16417186 - gi\|16417186\|gb\|AAL18608.1\| VMA1 [Saccharomyces sp. DH1-1A]	556.0	[0..1]	[619..1]
VATA_ASHGO - V-type proton ATPase catalytic subunit A OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9... gi\|5678607 - gi\|5678607\|emb\|CAB51771.1\| vacuolar ATPase subunit a [Eremothecium gossypii]	552.0	[0..1]	[619..1]
gi\|61369689, gi\|... - gi\|61369694\|gb\|AAX43375.1\| ATPase H+ transporting lysosomal 70kDa V1 subunit A [synthetic construct]...	550.0	[0..16]	[619..9]
ATP6V1A - ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A gi\|61359638 - gi\|61359638\|gb\|AAX41746.1\| ATPase H+ transporting lysosomal 70kDa V1 subunit A [synthetic construct]	550.0	[0..16]	[619..9]
gi\|109493234, gi... - gi\|34869154\|ref\|XP_340988.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit A, isoform 1 ...	550.0	[0..16]	[619..9]
gi\|109033102 - gi\|109033102\|ref\|XP_001106889.1\| PREDICTED: similar to ATPase, H+ transporting, lysosomal 70kD, V1 s...	550.0	[0..16]	[619..9]
VATA_PONAB - V-type proton ATPase catalytic subunit A OS=Pongo abelii GN=ATP6V1A PE=2 SV=1 VATA1_PONPY, VAT... - Vacuolar ATP synthase catalytic subunit A - Pongo pygmaeus (Orangutan), Vacuolar ATP synthase cataly...	549.0	[0..16]	[619..9]
gi\|27806225, gi\|... - gi\|75775489\|gb\|AAI05146.1\| ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A [Bos taurus], gi\|2...	548.0	[0..16]	[619..10]

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Predicted Domain #1

Region A:
Residues: [1-619]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGIELAKK AIRSLKNYDE HENRYGSIFS VSGPVVVAAN MLGCSMYELV RVGHEELVGE  60
   61 VIRIHQDKCT IQVYEETSGL TVGDPVQRTG KPLSVELGPG LAETIYDGIQ RPLKQIFDKS 120
  121 QSIYIPRGIN TESLNREHKW DFTPNKDLRI GDHVSGGDVF GSVFENSLFN DHKIMLPPRA 180
  181 RGTVTYIAEA GSYHVDEKLL EVEFNGKKHS FSMLHTWPVR AARPVADNLT ANQPLLTGQR 240
  241 VLDALYPCVQ GGTTAIPGAF GCGKTVISQS LSKYSNSDLI VYVGCGERGN EMAEVLMDFP 300
  301 ELTIDINGKP EPIMKRTTLV ANTSNMPVAA REASIYTGIT LAEYYRDQGK NVSMMADSTS 360
  361 RWAEALREIS GRLAEMPADS GYPAYLGAKL ASFYERAGRA RCLGSPDREG TVSIVGAVSP 420
  421 PGGDFSDPVT SATLGIVQVF WGLDKKLAQR KHFPSINTSL SYSKYINALQ PWYEERVPGF 480
  481 NTLRDQIKQI IQQEDSMLEI IQLVGKSALS ETDKVTLDIA GIIKNDFLQQ NGYSDYDRCC 540
  541 PLYKTYHMMR NMIAYYTKAK SAVETGSVPW SKIKESTSDI FYELTSMKFE NPNEGEKEIV 600
  601 EHYETLHKKI EDKFHTLTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	133.0
Match:	1vdzA
Description:	Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits