YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1399.04c
Organism:	Schizosaccharomyces pombe
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1399.04c.

Description	E-value	Query Range	Subject Range
UPP_LACLA - Uracil phosphoribosyltransferase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=upp PE=3 SV=... UPP_LACLA - Uracil phosphoribosyltransferase OS=Lactococcus lactis subsp. lactis GN=upp PE=3 SV=1	258.0	[0..12]	[219..4]
UPP_LACLM - Uracil phosphoribosyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=upp PE=3 S... gi\|599847 - gi\|599847\|emb\|CAA51755.1\| uracil phosphoribosyltransferase [Lactococcus lactis] UPP_LACLC - Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) - Lactococcus lactis...	258.0	[0..12]	[219..4]
UPP_LACLS - Uracil phosphoribosyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=upp PE=3 SV=...	257.0	[0..12]	[219..4]
UPP_STRSL - Uracil phosphoribosyltransferase OS=Streptococcus salivarius GN=upp PE=3 SV=1 gi\|228476631, gi... - gi\|228476631\|ref\|ZP_04061313.1\| uracil phosphoribosyltransferase [Streptococcus salivarius SK126], g...	254.0	[0..12]	[219..4]
UPP_PEDPA - Uracil phosphoribosyltransferase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=upp PE=3...	253.0	[0..16]	[219..8]
UPP_STRMU - Uracil phosphoribosyltransferase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=... gi\|254996869 - gi\|254996869\|dbj\|BAH87470.1\| uracil phosphoribosyltransferase [Streptococcus mutans NN2025] UPP_STRMU - Uracil phosphoribosyltransferase OS=Streptococcus mutans GN=upp PE=3 SV=1	253.0	[0..12]	[219..4]
gi\|55736433, gi\|... - gb\|AAV61958.1\| uracil phosphoribosyltransferase [Streptococcus thermophilus CNRZ1066], gb\|AAV60075.... UPP_STRT2 - Uracil phosphoribosyltransferase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=... UPP_STRTD - Uracil phosphoribosyltransferase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=upp ... UPP_STRT1 - Uracil phosphoribosyltransferase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=upp PE=3 SV=1	253.0	[0..12]	[219..4]
gi\|223933329, gi... - gi\|81097024\|ref\|ZP_00875340.1\| Uracil phosphoribosyl transferase [Streptococcus suis 89/1591], gi\|80...	252.0	[0..12]	[219..4]
gi\|229331222, gi... - gi\|229497796\|ref\|ZP_04391495.1\| uracil phosphoribosyltransferase [Geobacillus sp. Y412MC52], gi\|2293... gi\|1765902, gi\|2... - gi\|21465611\|pdb\|1I5E\|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil Phosphoribosyltran... UPP_GEOKA - Uracil phosphoribosyltransferase OS=Geobacillus kaustophilus GN=upp PE=3 SV=1 gi\|220709118, gi... - gi\|221087065\|ref\|ZP_03556605.1\| uracil phosphoribosyltransferase [Geobacillus sp. Y412MC61], gi\|2207... UPP_GEOKA - Uracil phosphoribosyltransferase OS=Geobacillus kaustophilus (strain HTA426) GN=upp PE=3 SV=1	250.0	[0..9]	[219..2]
gi\|170662856, gi... - gi\|170662856\|gb\|EDT15539.1\| uracil phosphoribosyltransferase [Clostridium perfringens E str. JGS1987... gi\|168210127, gi... - gi\|170711784\|gb\|EDT23966.1\| uracil phosphoribosyltransferase [Clostridium perfringens B str. ATCC 36... gi\|168213699, gi... - gi\|170714861\|gb\|EDT27043.1\| uracil phosphoribosyltransferase [Clostridium perfringens CPE str. F4969... UPP_CLOPE - Uracil phosphoribosyltransferase OS=Clostridium perfringens GN=upp PE=3 SV=1 UPP_CLOPE - Uracil phosphoribosyltransferase OS=Clostridium perfringens (strain 13 / Type A) GN=upp PE=3 SV=1 gi\|182382383, gi... - gi\|182382383\|gb\|EDT79862.1\| uracil phosphoribosyltransferase [Clostridium perfringens NCTC 8239], gi... gi\|169344222, gi... - gi\|169344222\|ref\|ZP_02865204.1\| uracil phosphoribosyltransferase [Clostridium perfringens C str. JGS... gi\|182623949, gi... - gi\|182623949\|ref\|ZP_02951737.1\| uracil phosphoribosyltransferase [Clostridium perfringens D str. JGS... UPP_CLOP1 - Uracil phosphoribosyltransferase OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 ...	250.0	[0..17]	[219..9]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPLEQPEN VVVLRQTMYL LSLMTILRDQ QTGHSEFVRT ANLIINMLMQ EALSALPYKK  60
   61 CLIKTSSGGT YTGVQPARDI CGVSILRAGE SMEYGLAAAC NYSVPVGKLL VQRDETTFEA 120
  121 KLMFCKLPKD AQDRLVLLLD PLLATGNSVI LAIQTLINKG IPEENIVFVN LIACNEGITN 180
  181 VFAKFPKLRM VTASIDPELN ANKYVVPGCG DFGDRYFGTC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	1bd3D
Description:	Uracil PRTase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
uracil phosphoribosyltransferase activity	3.97944228585882	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.91023158228049	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	3.07502596276449	bayes_pls_golite062009
transferase activity	2.73727660668741	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	2.67945744445872	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.53679639481311	bayes_pls_golite062009
catalytic activity	2.30431811394775	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	0.947697983706416	bayes_pls_golite062009
diphosphotransferase activity	0.749909396904601	bayes_pls_golite062009
binding	0.730385736169604	bayes_pls_golite062009
nucleic acid binding	0.552133387792911	bayes_pls_golite062009
DNA binding	0.439741935655503	bayes_pls_golite062009
transcription regulator activity	0.396538943915776	bayes_pls_golite062009
amidophosphoribosyltransferase activity	0.360901350940423	bayes_pls_golite062009
purine binding	0.358545436706029	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	0.148898393751978	bayes_pls_golite062009
nucleobase binding	0.0803493215714011	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: