YRC Public Data Repository - Protein Structure Prediction

Protein:	ump1
Organism:	Schizosaccharomyces pombe
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ump1.

Description	E-value	Query Range	Subject Range
gi\|58391560, gi\|... - gi\|58391560\|ref\|XP_318683.2\| AGAP009647-PA [Anopheles gambiae str. PEST], gi\|55235820\|gb\|EAA13823.2\|... AGAP009647-PA - proteasome maturation protein\|protein_coding\|3R:37602763:37603229:-1\|gene:AGAP009647	156.0	[0..2]	[129..2]
gi\|10834776 - gi\|10834776\|gb\|AAG23819.1\|AF275807_1 PNAS-110 [Homo sapiens]	149.0	[0..30]	[129..40]
POMP_BOVIN - Proteasome maturation protein OS=Bos taurus GN=POMP PE=2 SV=1	145.0	[0..30]	[129..40]
gi\|27691986, gi\|... - gi\|27691986\|ref\|XP_213700.1\| PREDICTED: similar to Pomp CG9324-PA [Rattus norvegicus], gi\|171847036\|...	145.0	[0..30]	[129..40]
UMP1 - Short-lived chaperone required for correct maturation of the 20S proteasome; may inhibit premature d... UMP1_YEAST - Proteasome maturation factor UMP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UMP1 P... gi\|190408674 - gi\|190408674\|gb\|EDV11939.1\| proteasome maturation factor UMP1 [Saccharomyces cerevisiae RM11-1a] gi\|151946563 - gi\|151946563\|gb\|EDN64785.1\| 20S proteasome maturation factor [Saccharomyces cerevisiae YJM789]	144.0	[0..1]	[129..1]
gi\|57104896 - gi\|57104896\|ref\|XP_534518.1\| PREDICTED: similar to CG9324-PA [Canis familiaris]	144.0	[0..30]	[129..40]
gi\|157105772, gi... - gi\|157105772\|ref\|XP_001649019.1\| Ump1p protein, putative [Aedes aegypti], gi\|108868957\|gb\|EAT33182.1...	142.0	[0..1]	[129..32]
gi\|9828633 - gi\|9828633\|gb\|AAG00256.1\|AC002130_21 F1N21.7 [Arabidopsis thaliana]	142.0	[0..35]	[129..33]
gi\|49904264, gi\|... - gi\|52346100\|ref\|NP_001005093.1\| MGC89819 protein [Xenopus (Silurana) tropicalis], gi\|49904264\|gb\|AAH...	141.0	[0..31]	[129..42]

Back

Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIVPDVEPA AEVSGNFKVS VLEPSIPAVH RVENKHPLES RLKNWEAQQQ QIRLDSMRRI  60
   61 YGLHEPVRRE MEQKLASQSS RPLALGGSAN FHLDILANRE AVLDETDIYA APIPLEMTYQ 120
  121 NEMAIRYGL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.552842
Match:	PF05348.2
Description:	No description for PF05348.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits