| Protein: | uap2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 367 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for uap2.
| Description | E-value | Query Range |
Subject Range |
|
|
190.0 | [0..1] | [351..72] |
|
|
188.0 | [0..1] | [351..72] |
|
Region A: Residues: [1-213] |
1 11 21 31 41 51
| | | | | |
1 MSSQPFWDER IHRWRCLGSE GNELIYIDEE QTWKDYDPNS LKMNKAGSTG AEVSDVTAEA 60
61 TEGKESSNGE DRHTKRLYES TSAEGYPSGS RNKKSKSENS EASPAPVINK AVYIQGLPLD 120
121 VTVDEIEEVF KKCGVIAKNI DNGTPRIKIY RTEDGTPKGD ALIVFFRSES VELAEQLFDD 180
181 TEFRYGSGQK MRVQKANIDY KKEKTVNKDV GGA
|
| Detection Method: |  |
| Confidence: | 3.69897 |
| Match: | 2adbA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD2 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [214-367] |
1 11 21 31 41 51
| | | | | |
1 LKKKALRLRQ QQMQQISSWD DVDEEVDDKR KKRFNKIVVL KHIFTLEELD KTPELLIDLK 60
61 DDITEEAEKC GRVTNVVLYD KEPDGVVTVR FSNNEEAEAC VRLMQGRYFD GRVVEASIYD 120
121 GKVRFQKSGK HTLDDEEDEE KRLEKFADWL ENSN
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 2ditA |
| Description: | No description for 2ditA was found. |
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
