YRC Public Data Repository - Protein Structure Prediction

Protein:	ntp1
Organism:	Schizosaccharomyces pombe
Length:	735 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ntp1.

Description	E-value	Query Range	Subject Range
TREB_NEUCR - Neutral trehalase OS=Neurospora crassa GN=treB PE=2 SV=2 TREB_NEUCR - Neutral trehalase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGS...	741.0	[0..1]	[730..1]
TREB_MAGGR - Neutral trehalase OS=Magnaporthe grisea GN=NTH1 PE=2 SV=2 TREB_MAGO7 - Neutral trehalase OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=NTH1 PE=2 SV=2	733.0	[0..5]	[730..1]
TREB_MAGGR - Neutral trehalase (EC 3.2.1.28) (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) - Mag...	732.0	[0..5]	[730..1]
TREB_ASHGO - Probable trehalase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=... TREB_ASHGO - Probable trehalase OS=Ashbya gossypii GN=NTH2 PE=3 SV=1	729.0	[0..9]	[728..3]
gi\|49823181, gi\|... - gi\|49823181\|gb\|AAT68667.1\| neutral trehalase [Metarhizium anisopliae var. anisopliae], gi\|11544719\|e... gi\|49823181, gi\|... - gi\|49823181\|gb\|AAT68667.1\| neutral trehalase [Metarhizium anisopliae var. anisopliae], gi\|11544719\|e...	728.0	[0..7]	[730..2]
TREB_NEUCR - (O42783) Neutral trehalase (EC 3.2.1.28) (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrola...	725.0	[0..1]	[714..1]
gi\|45550219, gi\|... - gi\|45550221\|gb\|AAS67889.1\| neutral trehalase [Metarhizium anisopliae var. acridum], gi\|45550219\|gb\|A...	722.0	[0..7]	[730..2]
NTH1 - Neutral trehalase, degrades trehalose; required for thermotolerance and may mediate resistance to ot... gi\|190405020 - gi\|190405020\|gb\|EDV08287.1\| neutral trehalase [Saccharomyces cerevisiae RM11-1a] TREA_YEAST - Neutral trehalase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NTH1 PE=1 SV=3	715.0	[0..2]	[727..6]
gi\|42547278, gi\|... - gi\|46136759\|ref\|XP_390071.1\| hypothetical protein FG09895.1 [Gibberella zeae PH-1], gi\|42547278\|gb\|E...	713.0	[0..7]	[731..2]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKFSSKYV DTEAISNDDD NPFATAKSYY SKDTDLSTRV SAGRPRTLST SMEASAAPTI  60
   61 PELKNLRRRG SLDEHKQPRK FLVDVDKTLN ALLESEDTDR NMQITIEDTG PKVVSLGSAS 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-735]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGYRLYELRG TYQLSNLLQE LTLAKDYGRR YILLDERRLN ENPVNRLSRL IKGTFWDALT  60
   61 RRIDASVLDV ICRDTKDRSG SHVNRIYVPK AEQEMYEYYV RAAKERPYLN LQVEYLPEEI 120
  121 TPEWVRDVND KPGLLALAME KYQDDEGNTH LRGVPFVVPG GRFNELYGWD SYFESLGLLV 180
  181 DDRVDLAKGM VENFIFEITY YGKILNANRT YYLLRSQPPF LTDMALRVYE RIKNEEGSLD 240
  241 FLHRAFSATI KEYHTVWTAT PRLDPKTGLS RYRPGGLGIP PETEASHFEH LLRPYMEKYH 300
  301 MTLEEFTHAY NYQQIHEPAL DEYFVHDRAV RESGHDTTYR LEKVCADLAT VDLNSLLYKY 360
  361 ETDISHVILE YFDDKFVLPN GTIETSAIWD RRARARRAAM EKYLWSEADS MWYDYNTKLE 420
  421 TKSTYESATA FWALWAGVAT PRQAAKFVDV SLPKFEVAGG IVAGTKRSLG KVGLDNPSRQ 480
  481 WDYPNGWSPQ QILAWYGLIR YGYEEETRRL VYRWLYTITK SFVDFNGIVV EKYDLTRPVD 540
  541 PHRVEAEYGN QGVNIKGVAR EGFGWVNASY EVGLTFCNSH MRRALGACTT PDVFFAGIKE 600
  601 ESLPAFENLS IHKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	2jf4A
Description:	No description for 2jf4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits