YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1687.19c
Organism:	Schizosaccharomyces pombe
Length:	404 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1687.19c.

Description	E-value	Query Range	Subject Range
gi\|145953288, gi... - gi\|90573603\|ref\|ZP_01230116.1\| hypothetical protein CdifQ_02003107 [Clostridium difficile QCD-32g58]...	607.0	[0..7]	[383..9]
TGT_CALS4 - Queuine tRNA-ribosyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15... TGT_THETN - Queuine tRNA-ribosyltransferase OS=Thermoanaerobacter tengcongensis GN=tgt PE=3 SV=1	607.0	[0..6]	[380..2]
gi\|126700418, gi... - gi\|126700418\|ref\|YP_001089315.1\| queuine tRNA-ribosyltransferase [Clostridium difficile 630], gi\|115...	606.0	[0..7]	[383..9]
TGT_THEP3 - Queuine tRNA-ribosyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=... gi\|241903878, gi... - gi\|241903878\|ref\|ZP_04788594.1\| queuine tRNA-ribosyltransferase [Thermoanaerobacter brockii subsp. f...	603.0	[0..6]	[381..2]
TGT_THEPX - Queuine tRNA-ribosyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=tgt PE=3 SV=1 gi\|242257226, gi... - gi\|242257226\|ref\|ZP_04802098.1\| queuine tRNA-ribosyltransferase [Thermoanaerobacter sp. X513], gi\|24...	602.0	[0..6]	[381..2]
gi\|77638097, gi\|... - gi\|77686122\|ref\|ZP_00801491.1\| Queuine/other tRNA-ribosyltransferase:Queuine tRNA-ribosyltransferase...	599.0	[0..5]	[381..8]
TGT_BACSU - Queuine tRNA-ribosyltransferase OS=Bacillus subtilis GN=tgt PE=3 SV=1 TGT_BACSU - Queuine tRNA-ribosyltransferase OS=Bacillus subtilis (strain 168) GN=tgt PE=3 SV=1 gi\|221324235 - gi\|221324235\|ref\|ZP_03605529.1\| queuine tRNA-ribosyltransferase [Bacillus subtilis subsp. subtilis s... gi\|221319954 - gi\|221319954\|ref\|ZP_03601248.1\| queuine tRNA-ribosyltransferase [Bacillus subtilis subsp. subtilis s... gi\|221315033 - gi\|221315033\|ref\|ZP_03596838.1\| queuine tRNA-ribosyltransferase [Bacillus subtilis subsp. subtilis s...	598.0	[0..7]	[385..5]
gi\|89084485, gi\|... - gi\|89100782\|ref\|ZP_01173635.1\| queuine tRNA-ribosyltransferase [Bacillus sp. NRRL B-14911], gi\|89084...	597.0	[0..6]	[385..2]
TGT_BACHD - Queuine tRNA-ribosyltransferase OS=Bacillus halodurans GN=tgt PE=3 SV=1 TGT_BACHD - Queuine tRNA-ribosyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 ...	595.0	[0..6]	[385..2]
gi\|37197672, gi\|... - gi\|37678930\|ref\|NP_933539.1\| queuine tRNA-ribosyltransferase [Vibrio vulnificus YJ016], gi\|37197672\|...	595.0	[0..4]	[394..54]

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Predicted Domain #1

Region A:
Residues: [1-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSFPALQF KVVARCSTTR ARVTDIQLPH GLVESPVFMP VGTQASLKGV LPEQLDALGC  60
   61 KIMLNNTYHL GLKPGQEVLD TVGGAHRFQS WNKNILTDSG GFQMVSLLKL ATITEDGVTF 120
  121 LSPRDGTPML LTPEHSISLQ NSIGSDIMMQ LDDVVHTLTE SKRMEEAMYR SIRWLDRCIQ 180
  181 AHKRPETQNL FCIIQGGLDK RLREICCREM VKRNTPGIAV GGLSGGEEKH AFCETVYTCT 240
  241 SILPDNKPRY LMGVGYAEDL VVCVALGMDM FDCVYPTRTA RFGNALTRKG VINLRNQKFR 300
  301 NDIGPLEEGC SCPCCKTELE GGWGITRAYF NSLVSKETVG ANLMTIHNVH FQLQLMRDMR 360
  361 ESIIKDEFPS FVKNFFHEWN HGDKSNYPSW AVDALRMVNI DLLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	155.0
Match:	1ozmA
Description:	Y106F mutant of Z. mobilis TGT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
queuine tRNA-ribosyltransferase activity	5.68673071384353	bayes_pls_golite062009
transferase activity	3.21194535271238	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.84864811414771	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.53039738178366	bayes_pls_golite062009
catalytic activity	2.02168745464921	bayes_pls_golite062009
binding	1.29132603807317	bayes_pls_golite062009
protein binding	0.136438951368546	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: