YRC Public Data Repository - Protein Structure Prediction

Protein:	alp31
Organism:	Schizosaccharomyces pombe
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alp31.

Description	E-value	Query Range	Subject Range
gi\|109483017 - gi\|109483017\|ref\|XP_001068383.1\| PREDICTED: similar to tubulin cofactor a (predicted) [Rattus norveg...	110.0	[0..1]	[101..13]
gi\|25408070 - gi\|25408070\|pir\|\|B84708 probable TCP1-chaperonin cofactor A [imported] - Arabidopsis thaliana	110.0	[0..4]	[81..3]
gi\|46096902, gi\|... - gi\|71005506\|ref\|XP_757419.1\| hypothetical protein UM01272.1 [Ustilago maydis 521], ref\|XP_398887.1\| ...	100.0	[0..1]	[113..5]
gi\|44980052 - gi\|44980052\|gb\|AAS50248.1\| AAL118Cp [Ashbya gossypii ATCC 10895] gi\|45184706, gi\|... - gi\|45184706\|ref\|NP_982424.1\| AAL118Cp [Ashbya gossypii ATCC 10895], gi\|44980052\|gb\|AAS50248.1\| AAL11...	97.0	[0..7]	[110..5]
gi\|55233244, gi\|... - gi\|58394716\|ref\|XP_320905.2\| ENSANGP00000017649 [Anopheles gambiae str. PEST], gi\|55233244\|gb\|EAA015...	97.0	[0..5]	[103..6]
CG1890-PA - This gene is referred to in FlyBase by the symbol Dmel\CG1890 (CG1890, FBgn0039869). It is a protein...	96.0	[0..5]	[115..6]
gi\|23613451, gi\|... - gi\|23613451\|ref\|NP_703295.1\| tubulin-specific chaperone a, putative [Plasmodium falciparum 3D7], gi\|...	96.0	[0..1]	[116..4]
gi\|49522853, gi\|... - gi\|49522853\|gb\|AAH71138.1\| MGC82305 protein [Xenopus laevis], gi\|148229733\|ref\|NP_001085368.1\| MGC82...	94.0	[0..5]	[79..6]
gi\|28278465, gi\|... - gi\|41054980\|ref\|NP_957348.1\| tubulin cofactor a [Danio rerio], gi\|28278465\|gb\|AAH46032.1\| Tubulin co...	93.0	[0..5]	[79..6]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTVRSLVI KTNVVKRIIK DVELAHIDIN EAEKRVQSKI DNGEDSAEIE HQKFVLKKHL  60
   61 EALPDALVRL RNATNDLESI SSDSAYEGTP ELEQANEYLE KAKEVIEKEQ TNFPTNGYH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1h7cA
Description:	Tubulin chaperone cofactor A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.09728509318083	bayes_pls_golite062009
tubulin binding	1.81432377631684	bayes_pls_golite062009
chaperone binding	1.51621791371755	bayes_pls_golite062009
cytoskeletal protein binding	1.23677613770082	bayes_pls_golite062009
protein binding	1.10534436186662	bayes_pls_golite062009
beta-tubulin binding	0.335453515773179	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: