YRC Public Data Repository - Protein Structure Prediction

Protein:	frs2
Organism:	Schizosaccharomyces pombe
Length:	499 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for frs2.

Description	E-value	Query Range	Subject Range
SYFA_ARATH - Phenylalanine--tRNA ligase alpha subunit, cytoplasmic OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3	484.0	[0..8]	[495..3]
gi\|114675621 - gi\|114675621\|ref\|XP_001170080.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	477.0	[0..1]	[498..1]
gi\|109123580 - gi\|109123580\|ref\|XP_001110025.1\| PREDICTED: phenylalanine-tRNA synthetase-like protein isoform 6 [Ma...	477.0	[0..1]	[498..1]
FARSA - phenylalanyl-tRNA synthetase, alpha subunit gi\|123994479, gi... - gi\|60655947\|gb\|AAX32537.1\| phenylalanine-tRNA synthetase-like alpha subunit [synthetic construct], g...	477.0	[0..1]	[498..1]
gi\|60652859, gi\|... - gi\|60652859\|gb\|AAX29124.1\| phenylalanine-tRNA synthetase-like alpha subunit [synthetic construct], g...	477.0	[0..1]	[498..1]
SYFA_PONPY - Phenylalanyl-tRNA synthetase alpha chain - Pongo pygmaeus (Orangutan) SYFA_PONAB - Phenylalanine--tRNA ligase alpha subunit OS=Pongo abelii GN=FARSA PE=2 SV=1	476.0	[0..1]	[498..1]
gi\|15488801 - gi\|15488801\|gb\|AAH13533.1\| Farsa protein [Mus musculus]	475.0	[0..1]	[498..1]
SYFAB_XENLA - Phenylalanine--tRNA ligase alpha subunit B OS=Xenopus laevis GN=farsa-b PE=2 SV=1	475.0	[0..1]	[496..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLEALQVF LLEKLNEKNE IPNTSHLEFD GKKLGPQEAQ SAILSLAAKN MIEFSRHEIE  60
   61 IYNLTAEGEN ICANGSHEAK VYNEICASMS GLNIGELKKK L

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.72
Match:	2qwwA
Description:	No description for 2qwwA was found.

Predicted Domain #2

Region A:
Residues: [102-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNSAGIGQGR AFKLGWIKKD GDKLVKNTDS ITDETPKVLS EIKEHGTISD SKTLTDLKKR  60
   61 KLVERNKIMY FSLRKGPNFS LQIEKLNTDL TAEMITSRSW ESAKFKSYNF AAEGIPPAGG 120
  121 CLHPLMKVRE EFRKFFFELG FEEMPTNNFV ESGFWNFDAL FVPQQHSARD AQDTFFLKVP 180
  181 ASTDKLPDPE YVARVKATHE NGGETKGIGY RAPFSLEETR KLVLRTHTTA VSANMLYKLA 240
  241 QNGFHPAKYF SIDRVFRNET VDATHLAEFH QVEGVICDRN ITLGDLIGFL EVFFGKMNVK 300
  301 NLRFKPAYNP YTEPSLEVFS YHEKLGKWVE VGNSGMFRPE MLEPMGLPKD VRCLGFGLSL 360
  361 ERPTMIKYGV ADIRQLIGPK VNLDLIEASP AVRLDKEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.0
Match:	1b70A
Description:	Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits