YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC3H7.02
Organism:	Schizosaccharomyces pombe
Length:	877 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3H7.02.

Description	E-value	Query Range	Subject Range
CYS14_NEUCR, CY1... - Sulfate permease 2 OS=Neurospora crassa GN=cys-14 PE=2 SV=3, (P23622) Sulfate permease II CYS14_NEUCR - Sulfate permease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FG...	524.0	[0..56]	[843..1]
gi\|82659470 - gi\|82659470\|gb\|ABB88849.1\| sulfate permease [Emericella nidulans] gi\|67524545, gi\|... - gi\|67524545\|ref\|XP_660334.1\| hypothetical protein AN2730.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	503.0	[0..60]	[843..18]
gi\|211585935 - gi\|211585935\|emb\|CAP93672.1\| sulfate permease SutB-Penicillium chrysogenum [Penicillium chrysogenum ... gi\|6502992 - gi\|6502992\|gb\|AAF14539.1\|AF163974_1 sulfate permease SutB [Penicillium chrysogenum]	501.0	[0..73]	[843..38]
SULH2_SCHPO - Probable sulfate permease C869.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869... SPAC869.05c - sulfate transporter	497.0	[0..65]	[849..54]
gi\|169770933 - gi\|169770933\|ref\|XP_001819936.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767795 - gi\|83767795\|dbj\|BAE57934.1\| unnamed protein product [Aspergillus oryzae]	491.0	[0..71]	[843..33]
gi\|32406346, gi\|... - gi\|32406346\|ref\|XP_323786.1\| hypothetical protein [Neurospora crassa], gi\|28918602\|gb\|EAA28274.1\| hy... gi\|85085443 - gi\|85085443\|ref\|XP_957510.1\| hypothetical protein [Neurospora crassa OR74A]	486.0	[0..44]	[843..55]
gi\|115388485, gi... - gi\|115388485\|ref\|XP_001211748.1\| hypothetical protein ATEG_02570 [Aspergillus terreus NIH2624], gi\|1...	480.0	[0..71]	[843..33]
gi\|38104289, gi\|... - gi\|39945316\|ref\|XP_362195.1\| hypothetical protein MGG_04640 [Magnaporthe grisea 70-15], gb\|EAA50881....	474.0	[0..84]	[843..40]
gi\|42546369, gi\|... - gi\|46108368\|ref\|XP_381242.1\| hypothetical protein FG01066.1 [Gibberella zeae PH-1], gi\|42546369\|gb\|E...	470.0	[0..87]	[843..42]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIKKIKHY FADPADLPQD EAPDSVPGLV PPPSNFVPVY PEPTYSDTVS KKGTIVRVVR  60
   61 HTASKLTKHG DSSQSLSTLP NNDISVGEYV EPLPSVPGWL KQNIFSHFGT RLLHYLRSLF 120
  121 PIMNWLPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	1hynP
Description:	Erythrocite membrane Band 3
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [129-511]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YNWNWLVYDF IAGITVGCVV VPQGMSYAKV ATLPAQYGLY SSFVGVAIYC IFATSKDVSI  60
   61 GPVAVMSLVT SKVIANVQAK DPNYDAAQIG TTLALLAGAI TCGLGLLRLG FIIEFIPVPA 120
  121 VAGFTTGSAL NIMAGQVSSL MGYKSRVHTN AATYRVIIQT LQNLPHTKVD AAFGLVSLFI 180
  181 LYLVRYTCQH LIKRYTKFQR VFFLTNVLRS AVIIIVGTAI SYGVCKHRRE NPPISILGTV 240
  241 PSGFRDMGVP VISRKLCADL ASELPVSVIV LLLEHISIAK SFGRVNDYKV IPDQELIAMG 300
  301 ATNLIGVFFH AYPATGSFSR SAINAKSGVR TPLGGIFTAG VVVLALYCLT GAFYYIPNAV 360
  361 LSAVIIHSVF DLIIPWRQTL LFW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.39794
Match:	1m56A
Description:	Bacterial aa3 type cytochrome c oxidase subunit I
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ion transmembrane transporter activity	6.40081133240949	bayes_pls_golite062009
cation transmembrane transporter activity	6.07151695779993	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.9695962563814	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	5.70388681170981	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.36384130014444	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.25497087659898	bayes_pls_golite062009
transporter activity	4.2806100513341	bayes_pls_golite062009
transmembrane transporter activity	4.19885907933483	bayes_pls_golite062009
substrate-specific transporter activity	4.09889747645813	bayes_pls_golite062009
oxidoreductase activity	2.99535035547855	bayes_pls_golite062009
heme-copper terminal oxidase activity	2.43885551987643	bayes_pls_golite062009
cytochrome-c oxidase activity	2.04232192418952	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	2.04232192418952	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	2.04232192418952	bayes_pls_golite062009
catalytic activity	1.95966890211023	bayes_pls_golite062009
binding	1.12832931822264	bayes_pls_golite062009
hydrolase activity	0.824122124100408	bayes_pls_golite062009
active transmembrane transporter activity	0.349031670056176	bayes_pls_golite062009
primary active transmembrane transporter activity	0.336122020727214	bayes_pls_golite062009
protein binding	0.235323288960659	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [512-611]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RMQPLEALIF ICAVFVSVFS SIENGIYTAV CLSAALLLFR IAKPSGSFLG ILKIANKFDD  60
   61 DENSIDVVRD IYVPLNQKGM NPNLTVRDPP AGVLIFRLQE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [612-759]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFTYPNAGHV NSMLTSKAKT VTRRGNANIY KKASDRPWND PAPRKKKNAP EVEDTRPLLR  60
   61 AIILDFSAVN HIDTTGVQAL VDTRKELEIY AGDEVEFHFT DINNDWIKRT LVAAGFGKAR 120
  121 DATKYTSRSI EVGSAAPLRD IETPMAPG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.23
Match:	1auzA
Description:	SOLUTION STRUCTURE OF SPOIIAA, A PHOSPHORYLATABLE COMPONENT OF THE SYSTEM THAT REGULATES TRANSCRIPTION FACTOR SIGMA-F OF BACILLUS SUBTILIS, NMR, 24 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.14643407404573	bayes_pls_golite062009
protein binding	1.48694301635456	bayes_pls_golite062009

Predicted Domain #5

Region A:
Residues: [760-877]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSRIVMPSSV RVRPFDEEEA IESSIPAIVS EDGADSDTIS VSDDKDKKVE GHRPSQDPTF  60
   61 SHHEYYPVIS TTYPFFHVDV TSAVVDIQYR HVLDVNYKPK IVTNEVENEN IEHSDGAA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: