| Protein: | end4 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1092 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for end4.
| Description | E-value | Query Range |
Subject Range |
|
|
404.0 | [0..31] | [1077..775] |
|
|
402.0 | [0..31] | [1077..777] |
|
|
401.0 | [0..31] | [1077..777] |
|
|
398.0 | [0..31] | [1080..724] |
|
|
398.0 | [0..31] | [1080..775] |
|
|
397.0 | [0..31] | [1080..778] |
|
|
397.0 | [0..31] | [1077..778] |
|
Region A: Residues: [1-408] |
1 11 21 31 41 51
| | | | | |
1 MQSDASLMTS VRKATSIDET APKRKHVRSC IIFTWDHHTA RPFWTAIKVQ PLLANEVQTF 60
61 KALITIHRVL QEGHKSALVD SQSEKGWLKT CERQYDGESS PKGYSDLIRD YVDYLLDKLS 120
121 FHAQHPEFNG TFEYKEYISL RQVDDPNEGY ETVYDMMNLQ DHIDEFQKQL FSNFKRSNKN 180
181 ECRIAALVPL VQESYGIYRF LTSMLRALYS TVDAPETLEP LKHRYKSQHH RLRQFYADCS 240
241 NLRYLTSLIS VPRLPHDPPD LEGDDNIPDL PKRPASIAPQ PTGASTIAPQ PTGTSPSPPV 300
301 EMNFPDTSDI TPAYSEPEPI QDFWSDPTLD QQLAAQQAAQ QAAQQQAELA AQQAAAQQAQ 360
361 LAAQQAAEME RQRMAAQQHQ QALEAIQMAQ AEQQRIAQEQ LAQQQFQM
|
| Detection Method: |  |
| Confidence: | 27.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [409-709] |
1 11 21 31 41 51
| | | | | |
1 QTQGQLAELE QQLLATRGQL EQSNVLLNQY DARVRTLENE LSQAGVNLQE QIHQNDDLIE 60
61 SLKNQILTWK NKYEALAKLY TQLRQEHLDL LSKYKQIQLK ASSAQEAIDK KEKMEREMKN 120
121 KNLELADMIL ERDRARHELE TMHRSQRDKQ ESTERELRLL QEKAASLERN KSSEVSNLLS 180
181 RYNTEVAHLE DALHSKDREL ANLGVELKST ENRYRQLLQE KEEELEIQKA AVDESLLQLS 240
241 KLQLDRNDID QAMDTQIDEL LKSQLEKLDD IVDSVLATGI QRLDTSLYEL DSPMHAGNQY 300
301 A
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 2i1jA |
| Description: | No description for 2i1jA was found. |
|
Region A: Residues: [710-806] |
1 11 21 31 41 51
| | | | | |
1 TPEFILSTIE NASNNATDFS TAFNNYFADG PNADHSEVIN GVNLFSTAIY EVANNAKGLS 60
61 RTTGDDQGSD RFVGLSRDLV NMAKRFLSSL FSVNTRK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [807-1092] |
1 11 21 31 41 51
| | | | | |
1 MDVNVKTDLV IGENIELQRY LQQLTQYSEK FLNKESENTV GLLNAPGENI EELVDNQLAE 60
61 TAQAIQQAIL RLQNIAAKPK DDSLSPSELQ VHDSLLSASI AITEAIARLI KAATASQAEI 120
121 VAQGRGSSSR GAFYKKHNRW TEGLISAAKA VARATTTLIE TADGVVNGTS SFEHLIVACN 180
181 GVSAATAQLV AASRVKANFA SKVQDHLEDA AKAVTEACKA LVRQVESVAL KAKEVQHEDF 240
241 SSLGVHEYRR KEIEQQVQIL KLENDLVAAR RRLFDMRKTS YHVAEE
|
| Detection Method: | |
| Confidence: | 6.01 |
| Match: | 1r0dA |
| Description: | HIP1R THATCH DOMAIN CORE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| clathrin binding | 6.05193509168143 | bayes_pls_golite062009 |
| protein binding | 2.56515310489265 | bayes_pls_golite062009 |
| binding | 2.30534322403186 | bayes_pls_golite062009 |
| phospholipid binding | 2.25660174911946 | bayes_pls_golite062009 |
| phosphoinositide binding | 1.85796661308258 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.61496023837625 | bayes_pls_golite062009 |
| actin binding | 1.54582237488591 | bayes_pls_golite062009 |
| lipid binding | 1.08971787423534 | bayes_pls_golite062009 |
