YRC Public Data Repository - Protein Structure Prediction

Protein:	skb15
Organism:	Schizosaccharomyces pombe
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for skb15.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	355.0	[0..2]	[341..1185]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	344.0	[0..3]	[337..1184]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	342.0	[0..4]	[337..794]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	338.0	[0..4]	[335..1131]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	335.0	[0..3]	[337..855]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFVVGTYT HLIYGVDADI ERKKCKPLWL FEAHEGALTA LAVDGIYLAS TSSDETIKIF  60
   61 DHTRNVQIAD VSVPTDIANA CIRDMCFTKN HLLACHDNGQ ISMWSKGSWL LVHTLKSSSH 120
  121 KGITGIAVHP SEKLALTVGG DGKLRLWDLV RGKGGKVLPL STIPESILFL NESSFVIMSR 180
  181 RGIDAFKLDL TSLFSFSSKS QLNALCLYQS KLIVGRDNGT VLVLDTSDGK ILHEFTAHKK 240
  241 RVKSVYPVDD YLITASSDGS VCIWDKDWNL VIEHNIPEGN RITCMVAMLA DSNSEPKNVE 300
  301 DEAAKRQSLD SETSETSSES ESESEYYSTS KQPPVKRTKH A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits