YRC Public Data Repository - Protein Structure Prediction

Protein:	rps002
Organism:	Schizosaccharomyces pombe
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps002.

Description	E-value	Query Range	Subject Range
gi\|147902645, gi... - gi\|28277316\|gb\|AAH46271.1\| Lamr1-prov protein [Xenopus laevis], gi\|147902645\|ref\|NP_001080730.1\| lam...	355.0	[0..1]	[287..1]
RSSA_BOVIN - 40S ribosomal protein SA OS=Bos taurus GN=RPSA PE=2 SV=4 gi\|187609256 - gi\|187609256\|pdb\|2ZKQ\|BB Chain b, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Compl...	355.0	[0..1]	[277..1]
gi\|61370578, gi\|... - gi\|61370584\|gb\|AAX43520.1\| laminin receptor 1 [synthetic construct], gi\|61370578\|gb\|AAX43519.1\| lami...	354.0	[0..1]	[277..1]
RSSA_RAT - 40S ribosomal protein SA OS=Rattus norvegicus GN=Rpsa PE=1 SV=3	354.0	[0..1]	[277..1]
gi\|30047125 - gi\|30047125\|gb\|AAH50688.1\| Ribosomal protein SA [Homo sapiens]	354.0	[0..1]	[277..1]
RSSA_PIG - 40S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=1 SV=3	354.0	[0..1]	[277..1]
gi\|78157165, gi\|... - gi\|78157165\|gb\|ABB22830.1\| laminin receptor 1 [Equus caballus], gi\|221139852\|ref\|NP_001137423.1\| lam... tr\|M3VZ17\|M3VZ17... - 40S ribosomal protein SA OS=Felis catus GN=RPSA PE=3 SV=1 gi\|73989780, gi\|... - gi\|73989797\|ref\|XP_860784.1\| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin... gi\|126341360 - gi\|126341360\|ref\|XP_001368957.1\| PREDICTED: similar to laminin receptor [Monodelphis domestica]	354.0	[0..1]	[277..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESIARPSV LNATDDDIKN LLAADSHIGS KNLEVRMENY VWKRRSDGIH IINLGKTWEK  60
   61 LVLAARVIAT IENPADVCVI SSRPYGHRAV LKFAAHTGAT AIAGRFTPGN FTNYITRTYR 120
  121 EPRLIIVTDP RADAQAIKEA SFVNIPVIAL CDTDSILNHV DVAIPINNKG YKSIGLAWYL 180
  181 LAREVLRLRG NISRTTAWEV MPDLYFYRDP E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	1s1hB
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [212-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIEREEEQKA AAAAAAEEEA QLAAQTAAAE FEVTDSAAGT VDPTILDNAT AGQVGQTTWE  60
   61 GDAEWNITGA APSEWA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits