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View Structure Prediction Details

Protein: rps002
Organism: Schizosaccharomyces pombe
Length: 287 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps002.

Description E-value Query
Range
Subject
Range
gi|147902645, gi... - gi|28277316|gb|AAH46271.1| Lamr1-prov protein [Xenopus laevis], gi|147902645|ref|NP_001080730.1| lam...
355.0 [0..1] [287..1]
RSSA_BOVIN - 40S ribosomal protein SA OS=Bos taurus GN=RPSA PE=2 SV=4
gi|187609256 - gi|187609256|pdb|2ZKQ|BB Chain b, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Compl...
355.0 [0..1] [277..1]
gi|61370578, gi|... - gi|61370584|gb|AAX43520.1| laminin receptor 1 [synthetic construct], gi|61370578|gb|AAX43519.1| lami...
354.0 [0..1] [277..1]
RSSA_RAT - 40S ribosomal protein SA OS=Rattus norvegicus GN=Rpsa PE=1 SV=3
354.0 [0..1] [277..1]
gi|30047125 - gi|30047125|gb|AAH50688.1| Ribosomal protein SA [Homo sapiens]
354.0 [0..1] [277..1]
RSSA_PIG - 40S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=1 SV=3
354.0 [0..1] [277..1]
gi|78157165, gi|... - gi|78157165|gb|ABB22830.1| laminin receptor 1 [Equus caballus], gi|221139852|ref|NP_001137423.1| lam...
tr|M3VZ17|M3VZ17... - 40S ribosomal protein SA OS=Felis catus GN=RPSA PE=3 SV=1
gi|73989780, gi|... - gi|73989797|ref|XP_860784.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin...
gi|126341360 - gi|126341360|ref|XP_001368957.1| PREDICTED: similar to laminin receptor [Monodelphis domestica]
354.0 [0..1] [277..1]

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Predicted Domain #1
Region A:
Residues: [1-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESIARPSV LNATDDDIKN LLAADSHIGS KNLEVRMENY VWKRRSDGIH IINLGKTWEK  60
   61 LVLAARVIAT IENPADVCVI SSRPYGHRAV LKFAAHTGAT AIAGRFTPGN FTNYITRTYR 120
  121 EPRLIIVTDP RADAQAIKEA SFVNIPVIAL CDTDSILNHV DVAIPINNKG YKSIGLAWYL 180
  181 LAREVLRLRG NISRTTAWEV MPDLYFYRDP E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.0
Match: 1s1hB
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [212-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIEREEEQKA AAAAAAEEEA QLAAQTAAAE FEVTDSAAGT VDPTILDNAT AGQVGQTTWE  60
   61 GDAEWNITGA APSEWA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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