| Protein: | rna1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 386 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rna1.
| Description | E-value | Query Range |
Subject Range |
|
|
191.0 | [0..3] | [384..187] |
|
|
176.0 | [0..6] | [384..346] |
|
Region A: Residues: [1-386] |
1 11 21 31 41 51
| | | | | |
1 MSRFSIEGKS LKLDAITTED EKSVFAVLLE DDSVKEIVLS GNTIGTEAAR WLSENIASKK 60
61 DLEIAEFSDI FTGRVKDEIP EALRLLLQAL LKCPKLHTVR LSDNAFGPTA QEPLIDFLSK 120
121 HTPLEHLYLH NNGLGPQAGA KIARALQELA VNKKAKNAPP LRSIICGRNR LENGSMKEWA 180
181 KTFQSHRLLH TVKMVQNGIR PEGIEHLLLE GLAYCQELKV LDLQDNTFTH LGSSALAIAL 240
241 KSWPNLRELG LNDCLLSARG AAAVVDAFSK LENIGLQTLR LQYNEIELDA VRTLKTVIDE 300
301 KMPDLLFLEL NGNRFSEEDD VVDEIREVFS TRGRGELDEL DDMEELTDEE EEDEEEEAES 360
361 QSPEPETSEE EKEDKELADE LSKAHI
|
| Detection Method: |  |
| Confidence: | 23.69897 |
| Match: | 1k5dC |
| Description: | Rna1p (RanGAP1), N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.665591019824 | bayes_pls_golite062009 |
| Ran GTPase activator activity | 2.34047639993996 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.29984527283876 | bayes_pls_golite062009 |
| protein binding | 1.61093336454573 | bayes_pls_golite062009 |
| small GTPase regulator activity | 1.2949624636683 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.28868732384901 | bayes_pls_golite062009 |
| GTPase regulator activity | 1.2181060000102 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 1.20424046001063 | bayes_pls_golite062009 |
| Ras GTPase activator activity | 1.08702516953191 | bayes_pls_golite062009 |
| actin binding | 0.79104197850666 | bayes_pls_golite062009 |
| GTPase activator activity | 0.709760900885283 | bayes_pls_golite062009 |
| enzyme activator activity | 0.283509641791735 | bayes_pls_golite062009 |
| catalytic activity | 0.143741655309638 | bayes_pls_golite062009 |
| tropomyosin binding | 0.102409833136912 | bayes_pls_golite062009 |
