YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl401
Organism:	Schizosaccharomyces pombe
Length:	363 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl401.

Description	E-value	Query Range	Subject Range
gi\|15293869 - gi\|15293869\|gb\|AAK95127.1\|AF401555_1 ribosomal protein L4 [Ictalurus punctatus]	456.0	[0..1]	[358..1]
gi\|94733359, gi\|... - gi\|94733359\|emb\|CAK04709.1\| ribosomal protein L4 [Danio rerio], gi\|54261775\|ref\|NP_998272.1\| ribosom...	451.0	[0..1]	[347..1]
gi\|37779080 - gi\|37779080\|gb\|AAP20200.1\| ribosomal protein L4 [Pagrus major]	448.0	[0..1]	[353..1]
RL4_CANLF - 60S ribosomal protein L4 OS=Canis lupus familiaris GN=RPL4 PE=1 SV=2	445.0	[0..1]	[362..1]
gi\|114657762 - gi\|114657762\|ref\|XP_001174724.1\| PREDICTED: similar to ribosomal protein isoform 1 [Pan troglodytes]	445.0	[0..2]	[355..52]
gi\|1487948 - gi\|1487948\|emb\|CAA68182.1\| ribosomal protein L4 [Canis sp.] RL4_CANFA - (Q28346) 60S ribosomal protein L4 (L1)	443.0	[0..2]	[362..1]
RL4A_SCHPO - 60S ribosomal protein L4-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl402 PE=1 SV=... rpl402 - 60S ribosomal protein L2	442.0	[0..1]	[363..1]
gi\|76642853 - gi\|76642853\|ref\|XP_871569.1\| PREDICTED: similar to ribosomal protein L4 isoform 2 [Bos taurus]	441.0	[0..1]	[362..1]
RL4_MACFA - 60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1	438.0	[0..1]	[355..1]

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Predicted Domain #1

Region A:
Residues: [1-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAARPTVSI YNKDGSVSSE TLALPFVFKA PIRPDLVRSV HTAVAKNKRQ PYAVSEKAGH  60
   61 QTSAESWGTG RALARIPRVG GGGTHRSGQA AFGNMCRSGR MFAPTKTWRK WHVKVNQNEK 120
  121 RYAIASAVAA SGVPSLLLAR GHRIEEIPEV PLVVDDAVQS FQKTKEAVAL LKEIKAYRDV 180
  181 IKVANSRKLR AGKGKLRNRR HVQRRGPLVV FNEDTGIVKA FRNIPGVEIV NVRRLNLLQL 240
  241 APGGHLGRFV IWTKSAFGLL DSVFGSTTEV AQLKKNYFLP ENIISNADVT RLINSDEIQS 300
  301 IVKAAGPSRV KRAHVQKKNP LKNKAVLSRL NPYAKAYKAN VKINSEKTPK AAGEKFLSVL 360
  361 HEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	1s1iD
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits