YRC Public Data Repository - Protein Structure Prediction

Protein:	rik1
Organism:	Schizosaccharomyces pombe
Length:	1040 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rik1.

Description	E-value	Query Range	Subject Range
gi\|114663425 - gi\|114663425\|ref\|XP_511081.2\| PREDICTED: similar to KIAA0017 protein [Pan troglodytes]	1106.0	[0..3]	[1037..70]
gi\|40788938 - gi\|40788938\|dbj\|BAA32662.2\| KIAA0017 protein [Homo sapiens]	1100.0	[0..3]	[1037..40]
gi\|73957045 - gi\|73957045\|ref\|XP_536791.2\| PREDICTED: similar to splicing factor 3b, subunit 3 isoform 1 [Canis fa... gi\|149699332 - gi\|149699332\|ref\|XP_001500880.1\| PREDICTED: similar to Splicing factor 3B subunit 3 (Spliceosome-ass...	1097.0	[0..3]	[1037..4]
tr\|G3HAF4\|G3HAF4... - Splicing factor 3B subunit 3 OS=Cricetulus griseus GN=I79_007403 PE=4 SV=1 tr\|E9PT66\|E9PT66_RAT - Protein Sf3b3 OS=Rattus norvegicus GN=Sf3b3 PE=4 SV=2 SF3B3_MOUSE - Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=1 SV=1	1097.0	[0..3]	[1037..4]
SF3B3_PONAB - Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1 SF3B3_PONPY - Splicing factor 3B subunit 3 - Pongo pygmaeus (Orangutan)	1091.0	[0..3]	[1037..4]
gi\|47087273, gi\|... - gi\|47087273\|ref\|NP_998668.1\| splicing factor 3b, subunit 3 [Danio rerio], gi\|28502779\|gb\|AAH47171.1\|...	1084.0	[0..3]	[1037..4]

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Predicted Domain #1

Region A:
Residues: [1-1040]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALCVHSFWA TAVDTATSCH FISSENCLVL LQALKINIYL CSEVHGLQFF TSIPLFSTVK  60
   61 HIRPYRPPGL DRDYLFVVLN DDTYFSIYWD EDYQKVIVDH PPVRYRVTFP WNRNAKSYCL 120
  121 VDLRMRAIFL SIDEISMICI RILSAEERLK TGRSIDSGFP FSFPVHLIYD MCILNDSSTP 180
  181 TLVVLHSDGL DCYVTAFLLD LSSKSLGKGI RLFERVKPSM IMPFGKRGLL VFESLFIHCM 240
  241 YRGNFVTING PCTTYMHWTP LKGQKMHYIV CDTNGYLFGV YSSILGKNKW SLVMERLPIP 300
  301 PFDFITSLNS IHEGLLFIGS KNSESKLINL STLKDVDSIP NLGPIHDLLV LKNDIEKSFL 360
  361 VCAGTPRNAS LIYFQHALKL DILGQTKISG ILRAMVLPSY PEHKLFLGFP SETVAFNIKE 420
  421 DFQLELDPSL STKERTIALS GTNGEFVQVT STFLCIYDSA KRSRLVYIEK ITNAACYQEY 480
  481 SAIVINGTAL AIFKKDTEVA RKVFESEISC LDFSAQFQIG VGFWSKQVMI LTFSDNSSIS 540
  541 CAFQTNVPSL PRNIILEGVG VDRNLLLVSS GSGEFKSYVL FKNNLVFSET KHFGTTPVSF 600
  601 RRFTMNIGTY IICNNDCPHM VYGFNGALCY MPLSMPQSYD VCQFRDNSGK DFLISVSLGG 660
  661 LKFLQLNPLP ELTPRKVLLE HVPLQAIIFQ NKLLLRTLEN RYEDYESYKE NYHLELVDSY 720
  721 DDNSFRVFSF TENERCEKVL KINESSLLVG TSIIEQDKLV PVNGRLILLE FEKELQSLKV 780
  781 VSSMVLSAAV IDLGVYNDRY IVAFGQQVAI VKLTEERLMI DSRISLGSIV LQLIVEGNEI 840
  841 AIADSIGRFT IMYFDGQKFI VVARYLFGEN IVKAALYEGT VYIIATNSGL LKLLRYNKDA 900
  901 KNFNDRFICE SVYHLHDKVS KFQNFPITNT NSFLEPKMLF ATEIGAIGSI VSLKDKELEL 960
  961 EELTRKIRKL KFSYLSSMDY ESIEADLISP VPFIDGDLVI DVKRWASSEL FRLCRSVEHR1020
 1021 ESLNSYQKVQ ALLEEIQSLC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2b5lA
Description:	Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits