YRC Public Data Repository - Protein Structure Prediction

Protein:	rhp18
Organism:	Schizosaccharomyces pombe
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rhp18.

Description	E-value	Query Range	Subject Range
UVSH_EMENI, RAD1... - (Q02398) Postreplication repair protein uvsH/nuvA, Postreplication repair E3 ubiquitin-protein ligas... RAD18_EMENI - Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Emericella nidulans (strain FGSC A4 / AT...	174.0	[0..5]	[376..6]
gi\|67900644, gi\|... - gi\|67900644\|ref\|XP_680578.1\| UVSH_EMENI Postreplication repair protein uvsH/nuvA [Aspergillus nidula...	174.0	[0..5]	[376..6]
gi\|109469957 - gi\|109469957\|ref\|XP_001053301.1\| PREDICTED: similar to Midline-2 (Midline defect 2) (Tripartite moti...	164.0	[0..20]	[375..181]
TRI18_MOUSE, MID... - Midline-1 OS=Mus musculus GN=Mid1 PE=1 SV=1, (O70583) Midline 1 protein (EC 6.3.2.-) (Tripartite mot...	158.0	[0..20]	[376..1]
gi\|109129902 - gi\|109129902\|ref\|XP_001093067.1\| PREDICTED: similar to midline 1 isoform alpha isoform 3 [Macaca mul...	157.0	[0..20]	[376..1]
gi\|74006467 - gi\|74006467\|ref\|XP_856584.1\| PREDICTED: similar to midline 1 isoform alpha isoform 12 [Canis familia...	157.0	[0..20]	[376..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELDATDPS DWNQTKIPSL KGLDSSLRCL ICHEYFRAPL ITSCSHTFCS FCIRDYLREH  60
   61 PMCPACRAPE QESRLRKNTI LEEILESFKV IRPTLFEFLK VENVPKPVLQ APETVIAQDS 120
  121 ASGDEEWEDD LASNSSPASI AKKTSRDSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.221849
Match:	2cklA
Description:	No description for 2cklA was found.

Predicted Domain #2

Region A:
Residues: [150-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRKREDLVHC PACSNLVPHN QINQHLDSCL NSPSSPSSSS SPYKNKDNSK SNSLLSFKTD  60
   61 DDSITKRRLR SFNSADELPL KDRVRLPKLT YALLSESKIR SKLSEMGLPT DGHKQLLQRR 120
  121 HAKWVTLYNS NLDQKQPVSK RNLIRQLIDW ERVQSKSIGV EKEKLGGGDW EKAYAEDFAD 180
  181 LINRAKQSTT NKNDSLRNTA VESSTEPSTS NGFPATSVSP PLTIDLTNSQ TGSDGPQS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits