| Protein: | rap1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 693 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rap1.
| Description | E-value | Query Range |
Subject Range |
|
|
1226.0 | [0..82] | [693..1] |
|
|
59.0 | [0..87] | [302..68] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MSFTFTKSDG SSILFAVSKN FEHIRGFKNA IDCFKGKIEF LSFDKVDPTK HDYYLVAEDE 60
61 RVSDLDIPKG FFERNPEFRH KMLKIAWITQ CIEQGKLLPT ESFEVELNQD DVNRTHDGFR 120
121 KRELFTLEDE KILIDHVHKN DINRFGTKVY EELARKYPQH SLESWRQHYK YMKKRL
|
| Detection Method: |  |
| Confidence: | 1.22 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [177-316] |
1 11 21 31 41 51
| | | | | |
1 PPVSDSDESN YCQRIIVKPY SSQKDYTQST HEQTLSSPIS KSASVSKSEN KALVNNKRYS 60
61 DSYFYFSKMR RISIDVDYVD EDLNLINAYL SQFGKKRSLN ELCALLSRRF SNRHTFSEWR 120
121 ALFMHFFPFI NSEGVDPAIL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [317-433] |
1 11 21 31 41 51
| | | | | |
1 SDRETSAMLD ETSDNEVADI DDQMIERKYL FSASEPNTVK STNRLIFSER KAYAADDSID 60
61 NTPSKVPIVN SLSDPRTNRP FFYSNPDSMY RSISNPLHLV DSQHLSPLNR KTHFNNP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.327 | a.29.10 | Description not found. |
| View | Download | 0.285 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.285 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.227 | a.74.1 | Cyclin-like |
| View | Download | 0.227 | a.74.1 | Cyclin-like |
| View | Download | 0.212 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.201 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.201 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
|
Region A: Residues: [434-496] |
1 11 21 31 41 51
| | | | | |
1 IGQPQFTCLD DHEKTLRETS FRSLDDMSLR KSNSDNIFVK PGEDLEIPLL SDYSDSENIS 60
61 EKS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.509 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.428 | b.34.2 | SH3-domain |
| View | Download | 0.422 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.415 | b.34.2 | SH3-domain |
| View | Download | 0.388 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.386 | d.58.17 | Metal-binding domain |
| View | Download | 0.383 | d.58.17 | Metal-binding domain |
| View | Download | 0.382 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.382 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.375 | d.58.40 | D-ribose-5-phosphate isomerase (RpiA), lid domain |
| View | Download | 0.291 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.200 | b.1.24 | Description not found. |
|
Region A: Residues: [497-597] |
1 11 21 31 41 51
| | | | | |
1 SDDEEAFEKQ VTSSYSSPIK VKSQGKSSKG SSGLDVREHE GSDDDAEVFV DRSPESFGAT 60
61 KVAHTSLEGN AASHKKVEEN MQQPVTKKQK KYRMVNEEAH T
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.518 | a.1.1 | Globin-like |
| View | Download | 0.410 | d.58.5 | GlnB-like |
| View | Download | 0.379 | a.1.1 | Globin-like |
| View | Download | 0.379 | a.1.1 | Globin-like |
| View | Download | 0.364 | d.58.5 | GlnB-like |
| View | Download | 0.294 | a.1.1 | Globin-like |
| View | Download | 0.272 | a.1.1 | Globin-like |
| View | Download | 0.264 | a.1.1 | Globin-like |
| View | Download | 0.260 | a.59.1 | PAH2 domain |
| View | Download | 0.227 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
|
Region A: Residues: [598-693] |
1 11 21 31 41 51
| | | | | |
1 GPTIIIPSDN NEKVTTLPAG HVPSEEKGKF INLAMHELQN EVSILRSSVN HREVDEAIDN 60
61 ILRYTNSTEQ QFLEAMESTG GRVRIAIAKL LSKQTS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.783 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.690 | a.39.1 | EF-hand |
| View | Download | 0.672 | a.39.1 | EF-hand |
| View | Download | 0.664 | a.39.1 | EF-hand |
| View | Download | 0.644 | d.42.1 | POZ domain |
| View | Download | 0.608 | a.219.1 | Description not found. |
| View | Download | 0.595 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.560 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.514 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.456 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.432 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.319 | d.118.1 | N-acetylmuramoyl-L-alanine amidase-like |
| View | Download | 0.302 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.229 | a.130.1 | Chorismate mutase II |
