YRC Public Data Repository - Protein Structure Prediction

Protein:	psi1
Organism:	Schizosaccharomyces pombe
Length:	379 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for psi1.

Description	E-value	Query Range	Subject Range
DNAJ_BURCE - Chaperone protein dnaJ - Burkholderia cepacia (Pseudomonas cepacia) DNAJ_BURML - (Q5NSW9) Chaperone protein dnaJ DNAJ_BURM1 - Chaperone protein DnaJ OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaJ PE=3 SV=1	347.0	[0..2]	[379..1]
gi\|194564151, gi... - gi\|84360930\|ref\|ZP_00985617.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...	346.0	[0..2]	[379..1]
DNAJ_RHIRD - Chaperone protein DnaJ OS=Rhizobium radiobacter GN=dnaJ PE=1 SV=1	346.0	[0..2]	[379..1]
gi\|53612269, gi\|... - gi\|67158732\|ref\|ZP_00419593.1\| DnaJ central domain (CXXCXGXG):Heat shock protein DnaJ, N-terminal:Ch... DNAJ_AZOVD - Chaperone protein DnaJ OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=dnaJ PE=3 SV=1	344.0	[0..2]	[379..1]
gi\|254194930, gi... - gi\|67761333\|ref\|ZP_00500043.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|134248167, gi... - gi\|134280160\|ref\|ZP_01766871.1\| chaperone protein DnaJ [Burkholderia pseudomallei 305], gi\|134248167... gi\|167740044 - gi\|167740044\|ref\|ZP_02412818.1\| chaperone protein DnaJ [Burkholderia pseudomallei 14] DNAJ_BURP0 - Chaperone protein DnaJ OS=Burkholderia pseudomallei (strain 1106a) GN=dnaJ PE=3 SV=1 gi\|167920345 - gi\|167920345\|ref\|ZP_02507436.1\| chaperone protein DnaJ [Burkholderia pseudomallei BCC215] gi\|242139778, gi... - gi\|82538618\|ref\|ZP_00897611.1\| hypothetical protein Bpse110_02000313 [Burkholderia pseudomallei 1106... DNAJ_BURP6 - Chaperone protein DnaJ OS=Burkholderia pseudomallei (strain 668) GN=dnaJ PE=3 SV=1 gi\|237813677, gi... - gi\|237813677\|ref\|YP_002898128.1\| chaperone protein DnaJ [Burkholderia pseudomallei MSHR346], gi\|2375...	344.0	[0..2]	[379..1]
gi\|251766684, gi... - gi\|251766684\|ref\|ZP_04819757.1\| chaperone protein DnaJ [Burkholderia mallei PRL-20], gi\|243064911\|gb... gi\|160694902, gi... - gi\|254178988\|ref\|ZP_04885642.1\| chaperone protein DnaJ [Burkholderia mallei ATCC 10399], gi\|19431828... DNAJ_BURM9 - Chaperone protein DnaJ OS=Burkholderia mallei (strain NCTC 10229) GN=dnaJ PE=3 SV=1 DNAJ_BURMA - Chaperone protein DnaJ OS=Burkholderia mallei (strain ATCC 23344) GN=dnaJ PE=3 SV=1 gi\|254355927, gi... - gi\|87316614\|ref\|ZP_01097629.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|194527815, gi... - gi\|83626719\|ref\|ZP_00936943.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... DNAJ_BURMA - Chaperone protein DnaJ OS=Burkholderia mallei GN=dnaJ PE=3 SV=1 gi\|67637931, gi\|... - gi\|67637931\|ref\|ZP_00436869.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|194522830, gi... - gi\|83621473\|ref\|ZP_00931882.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|67642150, gi\|... - gi\|67642150\|ref\|ZP_00440911.1\| chaperone protein DnaJ [Burkholderia mallei GB8 horse 4], gi\|23852324... DNAJ_BURM7 - Chaperone protein DnaJ OS=Burkholderia mallei (strain NCTC 10247) GN=dnaJ PE=3 SV=1 DNAJ_BURMS - Chaperone protein DnaJ OS=Burkholderia mallei (strain SAVP1) GN=dnaJ PE=3 SV=1 gi\|85065483 - gi\|85065483\|ref\|ZP_01026336.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...	343.0	[0..2]	[379..1]
DNAJ_AGRFC - Chaperone protein DnaJ OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=dnaJ PE=2 SV=2 gi\|25296037, gi\|... - pir\|\|AD2591 molecular chaperone, DnaJ family dnaJ [imported] - Agrobacterium tumefaciens (strain C58...	343.0	[0..2]	[379..1]
DNAJ_BURCC - Chaperone protein DnaJ OS=Burkholderia cenocepacia (strain MC0-3) GN=dnaJ PE=3 SV=1 DNAJ_BURCJ - Chaperone protein DnaJ OS=Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NC... gi\|254246252, gi... - gi\|84356871\|ref\|ZP_00981704.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... DNAJ_BURCA - Chaperone protein DnaJ OS=Burkholderia cenocepacia (strain AU 1054) GN=dnaJ PE=3 SV=1 DNAJ_BURCH - Chaperone protein DnaJ OS=Burkholderia cenocepacia (strain HI2424) GN=dnaJ PE=3 SV=1	342.0	[0..2]	[379..1]
DNAJ_PSE14 - Chaperone protein DnaJ OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=dnaJ PE...	342.0	[0..2]	[379..1]
DNAJ_BURVG - Chaperone protein DnaJ OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=dnaJ PE=3 SV=1	341.0	[0..2]	[379..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVADTKLYDC LEVRPEASEA ELKKAYRKLA LKYHPDKNPN GEKKFKEISL AYEVLSDPQR  60
   61 RKLYDQYGIT EGNAAPPPPG AEGGPGAGFG GFPGAGPGGA RTFHFNMGGP GGAQFFSASD 120
  121 PNDIFERVFG H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	2o37A
Description:	No description for 2o37A was found.

Predicted Domain #2

Region A:
Residues: [132-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFAGGGGMGG GMGGMGGMDD DMDMDGGFGT RTRGGGMPGG FANMFGGGGA GPHARRSHPS  60
   61 FGGSRPSQPP AQNEVITRPL NVSLEDLFTG CTKKMKISRH IIDASGQSVK ADRILEIKVK 120
  121 PGWKAGTKIK FAGEGDEKPD GTVQDIQFVL AEKPHPVFTR SGDDLRMQVE LSLKEALLGF 180
  181 SKQISTIDGK KLKVSSSLPT QPGYEITYPG FGMPLPKNPS QRGNMIIECK VKFPTELTPA 240
  241 QKTAAEAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.39794
Match:	1nltA
Description:	The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.13705208493215	bayes_pls_golite062009
unfolded protein binding	1.3925478652468	bayes_pls_golite062009
protein binding	1.32690171510656	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: