| Protein: | pop1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 775 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pop1.
| Description | E-value | Query Range |
Subject Range |
|
|
571.0 | [0..41] | [775..989] |
|
|
562.0 | [0..186] | [774..904] |
|
|
559.0 | [0..33] | [775..875] |
|
|
537.0 | [0..231] | [774..566] |
|
Region A: Residues: [1-185] |
1 11 21 31 41 51
| | | | | |
1 MNEKKKDSLS VLDSNEFFGE TTMVSPSIDV SSSPRPNVER FSPCSTKKDL LEGNNIMTRI 60
61 PEELSRVSLQ FDSKGSQQSM IFTNNRCLSD KENLENLQNL LYLHCDLNRP HLSCELPSEH 120
121 REKCLKRRNS SLSSNLHANK RFLFNSQSDG NKKNETFPST NYSNVFYPNN CDSKEVASET 180
181 TFSLD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [186-280] |
1 11 21 31 41 51
| | | | | |
1 APNNSVNYSY FSPNLLGNDS KTRQSFPPHS SSSSHNSLHE PVIYDFSSEN PSIHPSNHLS 60
61 SQKNAVLKLA QLISSFEKLP ESVRQYLLFH LLSRC
|
| Detection Method: | |
| Confidence: | 6.09691 |
| Match: | 1c5kA |
| Description: | TolB, C-terminal domain; TolB, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [281-775] |
1 11 21 31 41 51
| | | | | |
1 GKHAVQNIHK ILLPIFQKNF LTGFPAEITN LVLTHLDAPS LCAVSQVSHH WYKLVSSNEE 60
61 LWKSLFLKDG FFWDSIDSKI RTMCLEQSLS ACAIMKRVYF RHFNLRERWL HAPEKIKRCS 120
121 FPIHGVRLIT KLQFDDDKII VSTCSPRINI YDTKTGVLIR SLEEHEGDVW TFEYVGDTLV 180
181 TGSTDRTVRV WDLRTGECKQ VFYGHTSTIR CIKIVQGNQS TTDTDDVEKE NRPASNDANS 240
241 MPPYIISSSR DCTIRLWSLP CLDDPPFVNV NENPDQNNDF TSATTNPFYI RTLRGHTDSV 300
301 REVACLGDLI VSASYDGTLR VWKASTGVCL HVLRGHVGRV YSVTINPSRQ QCISAGTDAK 360
361 IRIWNLESGE LLQTLHGHSN LVSQVTFNQN ILVSASAPPD TSLRVWDLNT GSCRDILKCP 420
421 LGHIFFQHDE SKVVSGSHST LQLWDIRSGK LVRDLLTDLD IIWQVAYNEN VCVAAVLRNN 480
481 RFWIEVLEFG STKSS
|
| Detection Method: | |
| Confidence: | 71.39794 |
| Match: | 1nexB |
| Description: | Cdc4 F-box and linker domains; Cdc4 propeller domain |
Matching Structure (courtesy of the PDB): |
|
