YRC Public Data Repository - Protein Structure Prediction

Protein:	pof12
Organism:	Schizosaccharomyces pombe
Length:	440 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pof12.

Description	E-value	Query Range	Subject Range
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	202.0	[0..103]	[438..1017]
gi\|50731422 - gi\|50731422\|ref\|XP_417265.1\| PREDICTED: similar to F-box-WD40 repeat protein 6 [Gallus gallus]	202.0	[0..2]	[428..272]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	197.0	[0..101]	[437..1153]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	196.0	[0..63]	[440..637]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	196.0	[0..122]	[437..1344]
ago-PA, ago-PC, ... - The gene archipelago is referred to in FlyBase by the symbol Dmel\ago (CG15010, FBgn0041171). It is ...	193.0	[0..2]	[440..883]
gi\|88184074, gi\|... - gi\|88184074\|gb\|EAQ91542.1\| hypothetical protein CHGG_03477 [Chaetomium globosum CBS 148.51], gi\|1162...	193.0	[0..3]	[430..308]

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Predicted Domain #1

Region A:
Residues: [1-440]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTDVKAKNP ASIFSHETLL HVLNDLSAHD LAALERVSRS WNSIVRRSSV WHNLYLSEFG  60
   61 TKHLRRHGRI EKKRRNWKGL FRRQSNWKDG RCKKVESMLP QLLNSEKSVG EDRLGLTLTH 120
  121 QNNIYFCNDV QISKWSSVGN SLKCQAISSF RDETVKSGPA VMCLDNASLY IGLKDGNLLH 180
  181 VTVHETGFGN IENLATFSTK FVALSSHKNY ICGLTNDNNL YILQHSHQAG TKLKVLGKYH 240
  241 VSSIEKQVAI HFQQSKEGYE VVHVVFNDYV LSGGWTVSLQ EFVFNEYCVK SSRLALHDNK 300
  301 DIEYSQQPAS AIFMYGSYIL TSHPDNSLIL QRLYSTNNEL RIKFLGRLLG HVCGVQISKL 360
  361 FSCGRIVSVS KNCADICVWD LHDTNYQSIV SPLMLTCTNI HNKPVSDYEK ECKVQDIGLY 420
  421 EDTILITLSD GRILKFLFNI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits