YRC Public Data Repository - Protein Structure Prediction

Protein:	pof10
Organism:	Schizosaccharomyces pombe
Length:	662 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pof10.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	549.0	[0..27]	[623..1164]
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	545.0	[0..3]	[645..830]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	535.0	[0..3]	[634..873]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	524.0	[0..4]	[591..1054]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	508.0	[0..3]	[596..574]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	503.0	[0..21]	[647..637]
gi\|48893630, gi\|... - gi\|71673807\|ref\|ZP_00671555.1\| TPR repeat:G-protein beta WD-40 repeat:YD repeat [Trichodesmium eryth...	502.0	[0..3]	[601..963]

Back

Predicted Domain #1

Region A:
Residues: [1-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSEPTSLDF TSSNLRRMNR DHSSNNTNRT VLNLPKEILI IIFSFLDPRS LLSAQCTCKY  60
   61 WKKLLSDDLS WRTAFFHHFA GDQSQIFSPL GNGTWRQEYL LRSTITRAYE KGKGQTVQYD 120
  121 CRVGQLTNLY YDFSSGRLYS GNWLTGTISV SDPTTGKVER SLLHASTDGS FTHGLSTMTL 180
  181 GKQIFGFGFM DGRVGVILMS RQAETPRKFR YCLDSHADSV TCIDALTGDL PPTGEIGMVT 240
  241 GSDDGSVHCW DVKTGVSLQS FQFRSSQILS LCFRPKYKML LVDTFNYELN SYQLYLIPGY 300
  301 ARSRKNEQPI LLSSRKCVLT DEEEPPCLMT ADCCAGVAFL SRGAPKNCIC RVSFKEFLEK 360
  361 NDNVGVQTSS IPLNGKPTSI SLDTNDRVLS KSTPGRGARL LAVGDENGLV YVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	2ovpB
Description:	No description for 2ovpB was found.

Predicted Domain #2

Region A:
Residues: [414-575]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTRTEDPNKA ILRTITAYSN FPITDIYLNE VAMVVGSASG YCGVYDTVTG NFLKKIASAR  60
   61 NAARREPINC ILLDSNPLSL KGVITMSKHV KSWSYTIPKP FVNKRSKVLP LRPSVTHDNL 120
  121 SKSSDYSKNE VEREIMLGLD QIAQERREKM EARQKFEQHF GE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.39794
Match:	2gnqA
Description:	No description for 2gnqA was found.

Predicted Domain #3

Region A:
Residues: [576-662]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLVGLSEEEI IAYVTMLSQE EEAKRMVQLS MDVDKIEEDF KENDEQATSS LNALSSNHEP  60
   61 PQEQANVAEL NEQEQIELAM RLSLMEM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	1yx4A
Description:	Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits