YRC Public Data Repository - Protein Structure Prediction

Protein:	pof6
Organism:	Schizosaccharomyces pombe
Length:	872 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pof6.

Description	E-value	Query Range	Subject Range
gi\|46126089, gi\|... - gi\|46126089\|ref\|XP_387598.1\| hypothetical protein FG07422.1 [Gibberella zeae PH-1], gi\|42554596\|gb\|E...	896.0	[0..32]	[872..29]
gi\|38106975, gi\|... - gi\|39972369\|ref\|XP_367575.1\| hypothetical protein MGG_07486 [Magnaporthe grisea 70-15], gb\|EAA53209....	883.0	[0..41]	[872..35]
gi\|88178490, gi\|... - gi\|88178490\|gb\|EAQ85958.1\| hypothetical protein CHGG_07211 [Chaetomium globosum CBS 148.51], gi\|1161...	801.0	[0..3]	[872..11]
gi\|49084626, gi\|... - gi\|67516153\|ref\|XP_657962.1\| hypothetical protein AN0358.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	782.0	[0..4]	[869..2]
gi\|49646951 - gi\|49646951\|emb\|CAG83338.1\| YALI0B19074p [Yarrowia lipolytica] gi\|50547231, gi\|... - gi\|50547231\|ref\|XP_501085.1\| YALI0B19074p [Yarrowia lipolytica], gi\|49646951\|emb\|CAG83338.1\| YlSLS2 ...	756.0	[0..34]	[871..27]
gi\|3820457 - gi\|3820457\|emb\|CAA07559.1\| Sls2 [Yarrowia lipolytica]	753.0	[0..34]	[871..52]
gi\|115396852, gi... - gi\|115396852\|ref\|XP_001214065.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	736.0	[0..32]	[872..35]
gi\|119172813, gi... - gi\|90297738\|gb\|EAS27369.1\| hypothetical protein CIMG_09974 [Coccidioides immitis RS], gi\|119172813\|r...	717.0	[0..33]	[872..34]
gi\|83765754 - gi\|83765754\|dbj\|BAE55897.1\| unnamed protein product [Aspergillus oryzae] gi\|169766856 - gi\|169766856\|ref\|XP_001817899.1\| hypothetical protein [Aspergillus oryzae RIB40]	714.0	[0..33]	[872..36]
gi\|70990212, gi\|... - gi\|70990212\|ref\|XP_749955.1\| Sls2 [Aspergillus fumigatus Af293], gi\|66847587\|gb\|EAL87917.1\| Sls2 [As... gi\|159130435 - gi\|159130435\|gb\|EDP55548.1\| secretion pathway protein Sls2/Rcy1, putative [Aspergillus fumigatus A11...	693.0	[0..41]	[872..4]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSEAREHA IRKIKEYLER RHKQQFKALF GCLTINIYLK IFTLISTPDL CNCRLVCRKF  60
   61 QQLCDYNSIY VKKLLLMNAW DVTLSRKLYY ESQDGMSQAN MSSNTSKGFH LQSSDKKYAD 120
  121 SDRPKLSSSS LLSLPDQKIP FPVDYSTVQG KQVVLTVLDC VSQRVEFARL DYIKVWRALA 180
  181 PIYRNLAYAS NTIDPIAFSA FRTPEEQSKV LKYLIRFGNS YPYGTYR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	2ovpB
Description:	No description for 2ovpB was found.

Predicted Domain #2

Region A:
Residues: [228-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAMQNAILDM ASLFEQACLD EFELGLHSRN LDLLRKFSHV LHDFSGPNAY VSMYLAKQTD  60
   61 FVRSFFHFDP YSLFISNNLE EIHINWNILE SVVNDTIKLL ESESKFSEAT L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [339-489]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEPELVQVPY AKDILGNSLK DYVISICEHI GEEETELFLV FISGFYGLCK KFFSIPNGPA  60
   61 LVDTIFQPQI DIFISQELHY FKTVGWSLVD QWDQKLEEKE DATECFFYKN VSQNTAKNNF 120
  121 LETFKNVMLL PVSLFTIPSE NNSASNLAEK A

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [490-536]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEQKEEEDPE LSKLDAARFV PANIYVSKDR LKHLPTTELA AQAAVLD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [537-675]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKLEGISTMF SLELALKIVH LCKVSLARAK VFMGTSVPQD DDIKGLSKDL FVQLLRELGQ  60
   61 GHLKHGFDRA IEHLSSFDPR RDFSSNTVEP VVKFLELINV GDMIQQMMDS FFNEEMSPIC 120
  121 VKDDMFDPAI AEKKKFEQL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.946	0.040	protein binding, bridging	a.7.7	BAG domain

Predicted Domain #6

Region A:
Residues: [676-872]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDERAAFGLH KGINVLIEHA DFLLETKTPM NLFSDQTIGS ITNTIEPTAA AKNVVQFLGF  60
   61 HMRILVGRAD HEILDVFYKE VGMRLFDSLT RYIKSHKFSV DGGLKLLSDC NLYYEFIHSL 120
  121 HQSSLLPYFK TLKEIAHLFI IDGKNAEEIG KLATDTSRFS SAFHTEEVYE ILHSRIDWLN 180
  181 IKYEVDKVIH GLACCIM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits