YRC Public Data Repository - Protein Structure Prediction

Protein:	pof1
Organism:	Schizosaccharomyces pombe
Length:	605 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pof1.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	449.0	[0..37]	[603..1090]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	429.0	[0..92]	[603..595]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	426.0	[0..109]	[604..161]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	426.0	[0..24]	[605..863]
gi\|116200089, gi... - gi\|88179479\|gb\|EAQ86947.1\| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51], gi\|1162...	422.0	[0..9]	[605..830]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	421.0	[0..103]	[603..1083]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTGYESVPT SEPSDNLAPR AELWQRHLLE KKEGDQSISV SAFNISSMHN ELSGLSEKSR  60
   61 QRVEAVWAAF SEASCSERKL ALQGILNNC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.513	a.39.1	EF-hand
View	Download	0.675	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.704	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.518	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.563	a.24.13	Domain of the SRP/SRP receptor G-proteins

Predicted Domain #2

Region A:
Residues: [90-541]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSLLSFASS TLDSLVRLDF LSLLPVEISF RILSFLDARS LCQAAQVSKH WKELADDDVI  60
   61 WHRMCEQHIN RKCEKCGWGL PLLERNTLYA AKASIQKRYE RLTKRGVDQA HESSPVKKAK 120
  121 LDDYPTSSNE ETISSVKPPS PNSDSKFFLP FKTRPWKEVY AERCRVECNW RHGRCRQVVL 180
  181 SGHSDGVMCL QLVRNILASG SYDATIRLWN LATFQQVALL EGHSSGVTCL QFDQCKLISG 240
  241 SMDKTIRIWN YRTSECISIL HGHTDSVLCL TFDSTLLVSG SADCTVKLWH FSGGKRITLR 300
  301 GHTGPVNSVR IIRDRGLVLS GSDDSTIKIW SLETNTCLHT FSAHIGPVQS LALADSRLFS 360
  361 CSLDGTIKQW DIEKKKCVHT LFGHIEGVWE IAADHLRLIS GAHDGVVKVW EACECVHTLK 420
  421 NHSEPVTSVA LGDCEVVSGS EDGKIYLWLF NN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.09691
Match:	2ovpB
Description:	No description for 2ovpB was found.

Predicted Domain #3

Region A:
Residues: [542-605]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APNESPVSTQ SVPISSLNGQ RSNSSVQRAL SSVPNYSSSL SNISTRNLNI PPSNANNDDV  60
   61 SIQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2pm6B
Description:	No description for 2pm6B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits