YRC Public Data Repository - Protein Structure Prediction

Protein:	spb1
Organism:	Schizosaccharomyces pombe
Length:	802 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spb1.

Description	E-value	Query Range	Subject Range
SPB1_EMENI - AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans GN=spb1 PE=3 SV=1 SPB1_EMENI - AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / C...	503.0	[0..5]	[802..4]
SPB1_ASHGO - AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FG... SPB1_ASHGO - AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii GN=SPB1 PE=3 SV=1	502.0	[0..1]	[802..1]
gi\|115387475, gi... - gi\|115387475\|ref\|XP_001211243.1\| AdoMet-dependent rRNA methyltransferase spb-1 [Aspergillus terreus ...	501.0	[0..5]	[801..4]
gi\|46126149, gi\|... - gi\|46126149\|ref\|XP_387628.1\| hypothetical protein FG07452.1 [Gibberella zeae PH-1], gi\|42554626\|gb\|E...	500.0	[0..6]	[801..5]
gi\|159126832 - gi\|159126832\|gb\|EDP51948.1\| rRNA methyltransferase Spb1, putative [Aspergillus fumigatus A1163] SPB1_ASPFU - AdoMet-dependent rRNA methyltransferase spb1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /... SPB1_ASPFU - AdoMet-dependent rRNA methyltransferase spb1 OS=Aspergillus fumigatus GN=spb1 PE=3 SV=1	495.0	[0..5]	[801..4]
gi\|90298386, gi\|... - gi\|90298386\|gb\|EAS28017.1\| hypothetical protein CIMG_09221 [Coccidioides immitis RS], gi\|119174478\|r...	493.0	[0..5]	[802..4]
gi\|83772790 - gi\|83772790\|dbj\|BAE62918.1\| unnamed protein product [Aspergillus oryzae] gi\|169779173 - gi\|169779173\|ref\|XP_001824051.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220692886, gi... - gi\|238499797\|ref\|XP_002381133.1\| rRNA methyltransferase Spb1, putative [Aspergillus flavus NRRL3357]...	491.0	[0..5]	[802..4]
gi\|109116848, gi... - gi\|109116850\|ref\|XP_001116419.1\| PREDICTED: similar to FtsJ homolog 3 isoform 3 [Macaca mulatta], gi...	489.0	[0..1]	[792..1]
gi\|18028291 - gi\|18028291\|gb\|AAL56015.1\|AF327355_1 hypothetical protein SB92 [Homo sapiens]	487.0	[0..1]	[792..1]
gi\|169614552, gi... - gi\|169614552\|ref\|XP_001800692.1\| hypothetical protein SNOG_10422 [Phaeosphaeria nodorum SN15], gi\|11...	487.0	[0..5]	[801..4]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSQKKTAK GRLDKWYKLA KEQGYRSRAA FKLVQLNQKY SFLEKAKVII DLCAAPGGWL  60
   61 QVASKTCKPG SLIVGVDLAP IKPIPNCHTF VEDITSDKCR SQLRGYLKTW KADVVLHDGA 120
  121 PNVGSAWLQD AYGQAQLVLM SMKLACEFLV AGGTFVTKVF RSRDYNNLLW VFKQLFNKVE 180
  181 ATKPPSSRNV SAEIFVVCRG YKAPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.09691
Match:	1eizA
Description:	RNA methyltransferase FtsJ
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [207-340]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDPRFTDPRT VFEEVQEPVT NVDAKVFHPE KRKRSREGYA DDDYTLHKTV LASEFVTAND  60
   61 PIQILGTSAE IVFPKDDEEC QRLYNLDVTT EEILLCCSDL QVLGKKEFRD ILRWRLKIRD 120
  121 EMGIGKKVED EQKT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [341-695]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVEEIPEMDE EERLDQELQD LSEAERVKLK RERRKANQRK QREIVRMQMG MLAPMDIGLE  60
   61 HEAMGEDSLF GLATAEKHGL KELENGTLPV TESVDEEVST DNEVEYDSDD ERDRLEADLD 120
  121 SMYSDYTKRK AESDVKYRVK KARGDLDDEE WNGIDNGTES DDSQIAETNF ATPDKDRLTT 180
  181 SLLDKGSTKD GLSRKARMFF DQDIFDGIED ADADVEIMSM NRAAIKKREA ELASQNNDDG 240
  241 SKGDQSEDSN DHIEVVPVAS AHDEDDDWNS DSDNDENNVE IVTAEAMTLA QDIASRRKSK 300
  301 ADLIDEGYNR WSFQSKEGLP DWFLDEETTV NKPNKPITKE AVLALREKMK ALNAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.30103
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [696-802]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIKKVLEAQG RKKMRTIKRL QRVAKKAEGI SESGDMTESE KAKEISRLVS RATKSKPKAK  60
   61 PTLVVAKGPN KGLKSRPKGV KGKYKMVDSR MKKDLRAQKR LAKKGRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits