| Protein: | spb1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 802 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spb1.
| Description | E-value | Query Range |
Subject Range |
|
|
503.0 | [0..5] | [802..4] |
|
|
502.0 | [0..1] | [802..1] |
|
|
501.0 | [0..5] | [801..4] |
|
|
500.0 | [0..6] | [801..5] |
|
|
495.0 | [0..5] | [801..4] |
|
|
493.0 | [0..5] | [802..4] |
|
|
491.0 | [0..5] | [802..4] |
|
|
489.0 | [0..1] | [792..1] |
|
|
487.0 | [0..1] | [792..1] |
|
|
487.0 | [0..5] | [801..4] |
|
Region A: Residues: [1-206] |
1 11 21 31 41 51
| | | | | |
1 MGKSQKKTAK GRLDKWYKLA KEQGYRSRAA FKLVQLNQKY SFLEKAKVII DLCAAPGGWL 60
61 QVASKTCKPG SLIVGVDLAP IKPIPNCHTF VEDITSDKCR SQLRGYLKTW KADVVLHDGA 120
121 PNVGSAWLQD AYGQAQLVLM SMKLACEFLV AGGTFVTKVF RSRDYNNLLW VFKQLFNKVE 180
181 ATKPPSSRNV SAEIFVVCRG YKAPKK
|
| Detection Method: |  |
| Confidence: | 67.09691 |
| Match: | 1eizA |
| Description: | RNA methyltransferase FtsJ |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [207-340] |
1 11 21 31 41 51
| | | | | |
1 LDPRFTDPRT VFEEVQEPVT NVDAKVFHPE KRKRSREGYA DDDYTLHKTV LASEFVTAND 60
61 PIQILGTSAE IVFPKDDEEC QRLYNLDVTT EEILLCCSDL QVLGKKEFRD ILRWRLKIRD 120
121 EMGIGKKVED EQKT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.467 | c.95.1 | Thiolase-like |
| View | Download | 0.467 | c.95.1 | Thiolase-like |
| View | Download | 0.464 | c.95.1 | Thiolase-like |
| View | Download | 0.453 | d.352.1 | Description not found. |
| View | Download | 0.449 | c.95.1 | Thiolase-like |
| View | Download | 0.449 | c.95.1 | Thiolase-like |
| View | Download | 0.424 | c.95.1 | Thiolase-like |
| View | Download | 0.411 | c.95.1 | Thiolase-like |
| View | Download | 0.372 | c.95.1 | Thiolase-like |
| View | Download | 0.355 | c.95.1 | Thiolase-like |
|
Region A: Residues: [341-695] |
1 11 21 31 41 51
| | | | | |
1 VVEEIPEMDE EERLDQELQD LSEAERVKLK RERRKANQRK QREIVRMQMG MLAPMDIGLE 60
61 HEAMGEDSLF GLATAEKHGL KELENGTLPV TESVDEEVST DNEVEYDSDD ERDRLEADLD 120
121 SMYSDYTKRK AESDVKYRVK KARGDLDDEE WNGIDNGTES DDSQIAETNF ATPDKDRLTT 180
181 SLLDKGSTKD GLSRKARMFF DQDIFDGIED ADADVEIMSM NRAAIKKREA ELASQNNDDG 240
241 SKGDQSEDSN DHIEVVPVAS AHDEDDDWNS DSDNDENNVE IVTAEAMTLA QDIASRRKSK 300
301 ADLIDEGYNR WSFQSKEGLP DWFLDEETTV NKPNKPITKE AVLALREKMK ALNAR
|
| Detection Method: | |
| Confidence: | 16.30103 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [696-802] |
1 11 21 31 41 51
| | | | | |
1 PIKKVLEAQG RKKMRTIKRL QRVAKKAEGI SESGDMTESE KAKEISRLVS RATKSKPKAK 60
61 PTLVVAKGPN KGLKSRPKGV KGKYKMVDSR MKKDLRAQKR LAKKGRR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.608 | d.314.1 | Description not found. |
| View | Download | 0.598 | a.74.1 | Cyclin-like |
| View | Download | 0.522 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.472 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.461 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.457 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.428 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.386 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.288 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.287 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.212 | d.52.6 | BolA-like |
| View | Download | 0.211 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
