Protein: | pmc2 |
Organism: | Schizosaccharomyces pombe |
Length: | 454 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pmc2.
Description | E-value | Query Range |
Subject Range |
|
349.0 | [0..40] | [343..131] |
|
341.0 | [0..40] | [334..135] |
|
340.0 | [0..40] | [355..142] |
|
323.0 | [0..40] | [338..149] |
|
249.0 | [0..40] | [276..26] |
|
234.0 | [0..40] | [325..122] |
|
226.0 | [0..40] | [253..24] |
|
215.0 | [0..40] | [254..24] |
|
214.0 | [0..40] | [338..151] |
|
213.0 | [0..40] | [338..149] |
Region A: Residues: [1-237] |
1 11 21 31 41 51 | | | | | | 1 MDRPHLFSEV HFRRNASNPN QINWTRYWID CLSSVPWNDI SVTGFEYLAK KYGLEVFQDS 60 61 SKPNEVVLSL AGKIILIDIT VPINASPKDI NVVLAFANAS GEQYNNPVAE KLLKDAIYNC 120 121 NTPLFEKNVK WLATFDHSSP SVQQSCFQYL DSLSSSLNAI YEAELSLLAQ EENVIMHGNG 180 181 KPLSNYEGQL GLRIVYWKLL DKTYSTQIFM DNLSHESLPH LLFGYNLLNS PPILQSS |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [238-329] |
1 11 21 31 41 51 | | | | | | 1 KINWALENTL TPIPTTMELV FDDINLIIPE QGVKPLLDLL HVHDITIPWP VQNYSHMLGL 60 61 PSKSTVNYKF INKNQAIQLT GFDVSARSLR HV |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.656 | a.247.1 | Description not found. |
View | Download | 0.565 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
View | Download | 0.532 | a.77.1 | DEATH domain |
View | Download | 0.509 | a.77.1 | DEATH domain |
View | Download | 0.496 | a.60.8 | HRDC-like |
View | Download | 0.493 | a.217.1 | Description not found. |
View | Download | 0.484 | a.4.12 | TrpR-like |
Region A: Residues: [330-454] |
1 11 21 31 41 51 | | | | | | 1 PFHHPKQIRG ILAIVRQYLL LQLILENIKS ADLAETAASS SLHLSLYFKE HPIVHAQYQE 60 61 INKLNNSEQI IIVLSVLSDG RLNVDYMSSG GKELSKQQSH VFQKLIQQTC NIGLAIEVFI 120 121 KKVVN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.838 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.781 | d.129.3 | Bet v1-like |
View | Download | 0.752 | d.129.3 | Bet v1-like |
View | Download | 0.735 | d.129.3 | Bet v1-like |
View | Download | 0.725 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.717 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.709 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.681 | f.14.1 | Voltage-gated potassium channels |
View | Download | 0.652 | d.129.3 | Bet v1-like |
View | Download | 0.651 | f.14.1 | Voltage-gated potassium channels |