YRC Public Data Repository - Protein Structure Prediction

Protein:	pmc2
Organism:	Schizosaccharomyces pombe
Length:	454 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pmc2.

Description	E-value	Query Range	Subject Range
gi\|46137265, gi\|... - gi\|46137265\|ref\|XP_390324.1\| hypothetical protein FG10148.1 [Gibberella zeae PH-1], gi\|42545142\|gb\|E...	349.0	[0..40]	[343..131]
gi\|85100470 - gi\|85100470\|ref\|XP_960971.1\| hypothetical protein NCU04325 [Neurospora crassa OR74A] gi\|32406104, gi\|... - gi\|32406104\|ref\|XP_323665.1\| predicted protein [Neurospora crassa], gi\|28950185\|emb\|CAD71053.1\| puta...	341.0	[0..40]	[334..135]
gi\|38110452, gi\|... - gi\|39952349\|ref\|XP_363891.1\| hypothetical protein MG01817.4 [Magnaporthe grisea 70-15], gb\|EAA56166....	340.0	[0..40]	[355..142]
gi\|67527778, gi\|... - gi\|67527778\|ref\|XP_661764.1\| hypothetical protein AN4160.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	323.0	[0..40]	[338..149]
MED1_YEAST - Mediator of RNA polymerase II transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 20450... MED1 - Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form ... gi\|207340352 - gi\|207340352\|gb\|EDZ68729.1\| YPR070Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408006 - gi\|190408006\|gb\|EDV11271.1\| essential for transcriptional regulation [Saccharomyces cerevisiae RM11-...	249.0	[0..40]	[276..26]
gi\|116197735, gi... - gi\|88178302\|gb\|EAQ85770.1\| hypothetical protein CHGG_07023 [Chaetomium globosum CBS 148.51], gi\|1161...	234.0	[0..40]	[325..122]
MED1_ASHGO - Mediator of RNA polymerase II transcription subunit 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 10... MED1_ASHGO - Mediator of RNA polymerase II transcription subunit 1 OS=Ashbya gossypii GN=MED1 PE=3 SV=1	226.0	[0..40]	[253..24]
orf19.8446, orf1... - orf19.826 CGDID:CAL0002681 Assembly 19, Contig19-10076 (71793, 73649) CDS, translated using codon ta... gi\|68469880, gi\|... - gi\|68469880\|ref\|XP_720950.1\| hypothetical protein CaO19.826 [Candida albicans SC5314], gi\|68469641\|r... gi\|238882181 - gi\|238882181\|gb\|EEQ45819.1\| conserved hypothetical protein [Candida albicans WO-1]	215.0	[0..40]	[254..24]
gi\|66849152, gi\|... - gi\|70993342\|ref\|XP_751518.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668491...	214.0	[0..40]	[338..151]
gi\|114194770, gi... - gi\|115389738\|ref\|XP_001212374.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	213.0	[0..40]	[338..149]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRPHLFSEV HFRRNASNPN QINWTRYWID CLSSVPWNDI SVTGFEYLAK KYGLEVFQDS  60
   61 SKPNEVVLSL AGKIILIDIT VPINASPKDI NVVLAFANAS GEQYNNPVAE KLLKDAIYNC 120
  121 NTPLFEKNVK WLATFDHSSP SVQQSCFQYL DSLSSSLNAI YEAELSLLAQ EENVIMHGNG 180
  181 KPLSNYEGQL GLRIVYWKLL DKTYSTQIFM DNLSHESLPH LLFGYNLLNS PPILQSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [238-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KINWALENTL TPIPTTMELV FDDINLIIPE QGVKPLLDLL HVHDITIPWP VQNYSHMLGL  60
   61 PSKSTVNYKF INKNQAIQLT GFDVSARSLR HV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.656	a.247.1	Description not found.
View	Download	0.565	d.204.1	Ribosome binding protein Y (YfiA homologue)
View	Download	0.532	a.77.1	DEATH domain
View	Download	0.509	a.77.1	DEATH domain
View	Download	0.496	a.60.8	HRDC-like
View	Download	0.493	a.217.1	Description not found.
View	Download	0.484	a.4.12	TrpR-like

Predicted Domain #3

Region A:
Residues: [330-454]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFHHPKQIRG ILAIVRQYLL LQLILENIKS ADLAETAASS SLHLSLYFKE HPIVHAQYQE  60
   61 INKLNNSEQI IIVLSVLSDG RLNVDYMSSG GKELSKQQSH VFQKLIQQTC NIGLAIEVFI 120
  121 KKVVN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.838	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.781	d.129.3	Bet v1-like
View	Download	0.752	d.129.3	Bet v1-like
View	Download	0.735	d.129.3	Bet v1-like
View	Download	0.725	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.717	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.709	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.681	f.14.1	Voltage-gated potassium channels
View	Download	0.652	d.129.3	Bet v1-like
View	Download	0.651	f.14.1	Voltage-gated potassium channels

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits