YRC Public Data Repository - Protein Structure Prediction

Protein:	cwp1
Organism:	Schizosaccharomyces pombe
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cwp1.

Description	E-value	Query Range	Subject Range
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	226.0	[0..1]	[285..1054]
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	215.0	[0..1]	[286..59]
gi\|18250916, gi\|... - gi\|6911265\|gb\|AAF31458.1\| HRNT1 [Homo sapiens], gi\|2266994\|gb\|AAB63466.1\| O-linked GlcNAc transferas...	213.0	[0..1]	[286..58]
gi\|115936542, gi... - gi\|115936542\|ref\|XP_001177116.1\| PREDICTED: similar to UDP-N-acetylglucosaminyltransferase [Strongyl...	211.0	[0..13]	[293..152]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	209.0	[0..7]	[293..88]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	209.0	[0..13]	[293..299]
gi\|72002782, gi\|... - gi\|72382932\|ref\|YP_292287.1\| TPR repeat-containing protein [Prochlorococcus marinus str. NATL2A], gi...	209.0	[0..1]	[287..72]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPIDPELNE ILDFTEYGPL TPIPQDDGEN PLAKICYTTG YEQGMAYFRA IMAKKEYSLR  60
   61 ALNLTGFLIM NNPAHYTVWA YRFQILNHTP SYIDNELEWL DEIAEDFQKN YQVWHHRQKI 120
  121 LSLTKNYERE LEFTKKMFEI DSKNYHVWSY RVWILQNFND YSQELKLTNE LLEKDIYNNS 180
  181 AWNHRFYVLF ETSKVVSWSL EEELNYLKDK ILFAPDNQSA WNYLCGVLDK SGPSKLDNLI 240
  241 ANLRKNLPAL HKPLLEFLAM YEPSSSEEIY QKLANEVDVP HAALWTWMSQ RSNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	1o1rA
Description:	Protein farnesyltransferase alpha-subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein geranylgeranyltransferase activity	12.6759732522795	bayes_pls_golite062009
protein farnesyltransferase activity	12.1496415778348	bayes_pls_golite062009
prenyltransferase activity	11.9861287863026	bayes_pls_golite062009
CAAX-protein geranylgeranyltransferase activity	10.4593287273566	bayes_pls_golite062009
protein prenyltransferase activity	8.98854711542899	bayes_pls_golite062009
Rab geranylgeranyltransferase activity	6.64922604670914	bayes_pls_golite062009
binding	1.29714843812125	bayes_pls_golite062009
transferase activity	1.16403391633234	bayes_pls_golite062009
acetylcholine receptor regulator activity	1.13463233019211	bayes_pls_golite062009
catalytic activity	0.874200184943744	bayes_pls_golite062009
protein binding	0.439760416772506	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: