| Protein: | pac1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 363 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pac1.
| Description | E-value | Query Range |
Subject Range |
|
|
280.0 | [0..1] | [353..949] |
|
|
278.0 | [0..1] | [353..591] |
|
|
278.0 | [0..1] | [353..918] |
|
|
277.0 | [0..1] | [353..949] |
|
|
277.0 | [0..1] | [353..517] |
|
Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MGRFKRHHEG DSDSSSSASD SLSRGRRSLG HKRSSHIKNR QYYILEKKIR KLMFAMKALL 60
61 EETKHSTKDD VNLVIPGSTW SHIEGVYEML KSRHDRQNEP VIEE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [105-363] |
1 11 21 31 41 51
| | | | | |
1 PSSHPKNQKN QENNEPTSEE FEEGEYPPPL PPLRSEKLKE QVFMHISRAY EIYPNQSNPN 60
61 ELLDIHNERL EFLGDSFFNL FTTRIIFSKF PQMDEGSLSK LRAKFVGNES ADKFARLYGF 120
121 DKTLVLSYSA EKDQLRKSQK VIADTFEAYL GALILDGQEE TAFQWVSRLL QPKIANITVQ 180
181 RPIDKLAKSK LFHKYSTLGH IEYRWVDGAG GSAEGYVIAC IFNGKEVARA WGANQKDAGS 240
241 RAAMQALEVL AKDYSKFAR
|
| Detection Method: | |
| Confidence: | 52.69897 |
| Match: | 1o0wA |
| Description: | RNase III endonuclease catalytic domain; RNase III, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.49736268261512 | bayes_pls_golite062009 |
| binding | 3.09705138687537 | bayes_pls_golite062009 |
| nucleic acid binding | 2.95361490759242 | bayes_pls_golite062009 |
| endoribonuclease activity | 1.62086478301433 | bayes_pls_golite062009 |
| DNA binding | 1.51133867432475 | bayes_pls_golite062009 |
| double-stranded RNA binding | 1.46317494664076 | bayes_pls_golite062009 |
| protein binding | 1.33336414936007 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.33042413200827 | bayes_pls_golite062009 |
| transcription regulator activity | 1.25950932467779 | bayes_pls_golite062009 |
| structural molecule activity | 1.17628321323282 | bayes_pls_golite062009 |
| transcription factor activity | 0.42419387757895 | bayes_pls_golite062009 |
