YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC5H10.04
Organism:	Schizosaccharomyces pombe
Length:	382 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC5H10.04.

Description	E-value	Query Range	Subject Range
gi\|114704859, gi... - gi\|114704859\|ref\|ZP_01437767.1\| NADH:flavin oxidoreductase/NADH oxidase [Fulvimarina pelagi HTCC2506...	391.0	[0..6]	[382..5]
gi\|23126675, gi\|... - gi\|23126675\|ref\|ZP_00108564.1\| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Nosto...	390.0	[0..1]	[381..1]
gi\|5701740 - gi\|5701740\|dbj\|BAA83083.1\| LEDI-5a protein [Lithospermum erythrorhizon]	387.0	[0..1]	[378..1]
gi\|86574344, gi\|... - gi\|86751316\|ref\|YP_487812.1\| NADH:flavin oxidoreductase/NADH oxidase [Rhodopseudomonas palustris HaA...	384.0	[0..1]	[382..7]
gi\|115517353, gi... - gi\|115523406\|ref\|YP_780317.1\| NADH:flavin oxidoreductase/NADH oxidase [Rhodopseudomonas palustris Bi...	384.0	[0..1]	[382..1]
gi\|81299284, gi\|... - gi\|81299284\|ref\|YP_399492.1\| NADH:flavin oxidoreductase [Synechococcus elongatus PCC 7942], gi\|81168...	382.0	[0..1]	[378..1]
gi\|77690565, gi\|... - gi\|91978523\|ref\|YP_571182.1\| NADH:flavin oxidoreductase/NADH oxidase [Rhodopseudomonas palustris Bis...	381.0	[0..1]	[382..97]
gi\|78495386, gi\|... - gi\|90422879\|ref\|YP_531249.1\| NADH:flavin oxidoreductase/NADH oxidase [Rhodopseudomonas palustris Bis...	379.0	[0..1]	[381..1]
gi\|17130955, gi\|... - gi\|17229357\|ref\|NP_485905.1\| hypothetical protein all1865 [Nostoc sp. PCC 7120], gi\|17130955\|dbj\|BAB... gi\|25325984 - pir\|\|AC2039 hypothetical protein all1865 [imported] - Nostoc sp. (strain PCC 7120)	379.0	[0..1]	[375..38]

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Predicted Domain #1

Region A:
Residues: [1-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDRGELFKP IKVGNMLLQH RIVHAPMTRL RATDYGKITG LMVEYYSQRS MIPGTLLIAD  60
   61 ATFVGEKSGG FPNNPRCFTK EQAESWIPLV EAVHKNKSFL FIQFWPLPGD LKDEYRNDLE 120
  121 KMQKITYSDC PQDPGGLPAG IHSFDAVQGV EVYKKKYMSK RDIQEHIQDF VNAADLAVNI 180
  181 AKADGVEIHQ VNGFLLDRFV LGGFGDQCDP EYRGSIENRC RFPLEVLEAV TRKIGQERVG 240
  241 YRISPFSGWM QKIDFMEVNI YLMSEIAKRF PKLAYIHAIE PRKYWSGHKL VSSEQNTSFL 300
  301 QKYWKGPFIT AGGYDPETAV QAANERGVLV AFGRNFIANP DLVFRIKHHI PLNKWDRSSF 360
  361 YLPKTEKGYT DYPFSKEFLQ SK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	1vjiA
Description:	Gene Product of At1g76680 from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	3.50791144647902	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	2.11027907327307	bayes_pls_golite062009
catalytic activity	1.94749091175302	bayes_pls_golite062009
coenzyme binding	0.99234662301893	bayes_pls_golite062009
binding	0.724672865863266	bayes_pls_golite062009
nucleic acid binding	0.350068675013616	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.0276497014195508	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: