YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC27F1.07
Organism:	Schizosaccharomyces pombe
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC27F1.07.

Description	E-value	Query Range	Subject Range
gi\|45361637, gi\|... - gi\|89272417\|emb\|CAJ82807.1\| ribophorin I [Xenopus tropicalis], gi\|45361637\|ref\|NP_989394.1\| hypothet...	602.0	[0..5]	[446..7]
gi\|28277278, gi\|... - gi\|28277278\|gb\|AAH44106.1\| MGC52808 protein [Xenopus laevis], gi\|147905905\|ref\|NP_001082504.1\| simil...	597.0	[0..5]	[446..7]
gi\|37497110, gi\|... - gi\|37497110\|ref\|NP_922916.1\| ribophorin I [Danio rerio], gi\|23194245\|gb\|AAN15068.1\| ribophorin I [Da...	594.0	[0..5]	[446..11]
gi\|50754383 - gi\|50754383\|ref\|XP_414360.1\| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein glycos...	590.0	[0..19]	[446..274]
RPN1 - ribophorin I	590.0	[0..9]	[446..17]
gi\|55725354 - gi\|55725354\|emb\|CAH89541.1\| hypothetical protein [Pongo abelii] RPN1_PONAB - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Pongo abelii GN=RPN1 PE=...	589.0	[0..9]	[446..17]
gi\|114589051, gi... - gi\|114589053\|ref\|XP_516729.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|114589...	589.0	[0..9]	[446..17]
gi\|73984484 - gi\|73984484\|ref\|XP_848830.1\| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein glycos...	588.0	[0..8]	[446..16]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLKLLLWS IISGLSLAEQ VWRNSNAIRT IDLRSTYTKT LTSLIIVNEG DEPQNTYRYF  60
   61 QQTSPGESVL SLSVSIKEEE KKGTNPIKVN NNVYDIPLQP PVKPGESRTL LIQAGLDGGV 120
  121 RPLPAAVDQD EEQYLVYLTT LYLDSPYTTD LQRTRLILPS AKIDTYTTYN IDGAELPNRV 180
  181 GNTLVYESRE TITGEDN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [198-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLGEIYVRYE HTVPIPRGAD LYVQIDMHEY RKMLEVSERV VFENHAAKLK SNFDRAKWYM  60
   61 GNFYNPVSTA INRVVYSLPR NSKDVYYTDE VGNITTSHMR VEPHQTWIEL NPRYPVFGGW 120
  121 NYLFQLDWKM PYEEFRSSKN RREYLDIPLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [348-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSPGDMIYEK AVWSYVFPEG ATNIEIEMPV EISNSNVTKI HKFLDTLGRQ VFTYEALNVT  60
   61 DGVPSDIVHI SYEYNSSAFF LRIAIITTLL ILLAAAAYMI WAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits