YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPAC27F1.07
Organism: Schizosaccharomyces pombe
Length: 450 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC27F1.07.

Description E-value Query
Range
Subject
Range
gi|45361637, gi|... - gi|89272417|emb|CAJ82807.1| ribophorin I [Xenopus tropicalis], gi|45361637|ref|NP_989394.1| hypothet...
602.0 [0..5] [446..7]
gi|28277278, gi|... - gi|28277278|gb|AAH44106.1| MGC52808 protein [Xenopus laevis], gi|147905905|ref|NP_001082504.1| simil...
597.0 [0..5] [446..7]
gi|37497110, gi|... - gi|37497110|ref|NP_922916.1| ribophorin I [Danio rerio], gi|23194245|gb|AAN15068.1| ribophorin I [Da...
594.0 [0..5] [446..11]
gi|50754383 - gi|50754383|ref|XP_414360.1| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein glycos...
590.0 [0..19] [446..274]
RPN1 - ribophorin I
590.0 [0..9] [446..17]
gi|55725354 - gi|55725354|emb|CAH89541.1| hypothetical protein [Pongo abelii]
RPN1_PONAB - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Pongo abelii GN=RPN1 PE=...
589.0 [0..9] [446..17]
gi|114589051, gi... - gi|114589053|ref|XP_516729.2| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi|114589...
589.0 [0..9] [446..17]
gi|73984484 - gi|73984484|ref|XP_848830.1| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein glycos...
588.0 [0..8] [446..16]

Back

Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLKLLLWS IISGLSLAEQ VWRNSNAIRT IDLRSTYTKT LTSLIIVNEG DEPQNTYRYF  60
   61 QQTSPGESVL SLSVSIKEEE KKGTNPIKVN NNVYDIPLQP PVKPGESRTL LIQAGLDGGV 120
  121 RPLPAAVDQD EEQYLVYLTT LYLDSPYTTD LQRTRLILPS AKIDTYTTYN IDGAELPNRV 180
  181 GNTLVYESRE TITGEDN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.645 N/A N/A b.7.1 C2 domain (Calcium/lipid-binding domain, CaLB)
View Download 0.611 N/A N/A d.54.1 Enolase N-terminal domain-like
View Download 0.606 N/A N/A b.1.1 Immunoglobulin
View Download 0.530 N/A N/A d.232.1 Mago nashi protein
View Download 0.488 N/A N/A d.54.1 Enolase N-terminal domain-like

Predicted Domain #2
Region A:
Residues: [198-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLGEIYVRYE HTVPIPRGAD LYVQIDMHEY RKMLEVSERV VFENHAAKLK SNFDRAKWYM  60
   61 GNFYNPVSTA INRVVYSLPR NSKDVYYTDE VGNITTSHMR VEPHQTWIEL NPRYPVFGGW 120
  121 NYLFQLDWKM PYEEFRSSKN RREYLDIPLA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [348-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSPGDMIYEK AVWSYVFPEG ATNIEIEMPV EISNSNVTKI HKFLDTLGRQ VFTYEALNVT  60
   61 DGVPSDIVHI SYEYNSSAFF LRIAIITTLL ILLAAAAYMI WAP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.764 N/A N/A d.58.12 eEF-1beta-like
View Download 0.762 N/A N/A b.1.2 Fibronectin type III
View Download 0.760 N/A N/A b.1.2 Fibronectin type III
View Download 0.680 N/A N/A b.1.1 Immunoglobulin
View Download 0.657 N/A N/A d.17.2 Copper amine oxidase, domains 1 and 2


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle