YRC Public Data Repository - Protein Structure Prediction

Protein:	orb6
Organism:	Schizosaccharomyces pombe
Length:	469 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for orb6.

Description	E-value	Query Range	Subject Range
CBK1_ASHGO - Serine/threonine-protein kinase CBK1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 ... CBK1_ASHGO - Serine/threonine-protein kinase CBK1 OS=Ashbya gossypii GN=CBK1 PE=3 SV=1	343.0	[0..5]	[469..222]
CBK1_CANAL - Serine/threonine-protein kinase CBK1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBK1 PE=... orf19.12375, orf... - CBK1 CGDID:CAL0006211 Assembly 19, Contig19-10215 (413413, 411215) CDS, reverse complemented, transl...	326.0	[0..5]	[469..245]
CBK1_YEAST - Serine/threonine-protein kinase CBK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBK... CBK1 - Serine/threonine protein kinase that regulates cell morphogenesis pathways; involved in cell wall bi...	325.0	[0..5]	[469..264]
gi\|22135803, gi\|... - gi\|30682811\|ref\|NP_849380.1\| protein kinase family protein [Arabidopsis thaliana], gi\|30682806\|ref\|N...	325.0	[0..13]	[467..39]
CBK1_PNECA - Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1	324.0	[0..5]	[469..38]
CBK1_CANGA - Serine/threonine-protein kinase CBK1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NB... CBK1_CANGA - Serine/threonine-protein kinase CBK1 OS=Candida glabrata GN=CBK1 PE=3 SV=1	323.0	[0..2]	[469..279]
CBK1_KLULA - Serine/threonine-protein kinase CBK1 OS=Kluyveromyces lactis GN=CBK1 PE=3 SV=2 CBK1_KLULA - Serine/threonine-protein kinase CBK1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7079...	321.0	[0..4]	[469..214]
gi\|62857016 - gi\|62857016\|dbj\|BAD95893.1\| Ser/Thr protein kinase [Lotus japonicus]	318.0	[0..12]	[465..38]

Back

Predicted Domain #1

Region A:
Residues: [1-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKNDYLHFE RNPSLFPKST LDKVQKTKKY IEHYYKVAVD HAVERNQRRI NLEQRLATER  60
   61 GSEERKNRQL RASGEKESQF LRFRRTRLSL EDFSTIKVIG KGAFGEVRLV QKLDTGKIYA 120
  121 MKSLLKTEMF KRDQLAHVKA ERDLLVESDS PWVVSLYYAF QDSLYLYLIM EFLPGGDLMT 180
  181 MLINYDTFSE DVTRFYMAEC VLAIADVHRM GYIHRDIKPD NILIDRDGHI KLSDFGLSTG 240
  241 FYKQDQSASY MKPRTGNTVK RGQMVDAIWL TMSSKDKMAT WKKNRRVMAY STVGTPDYIA 300
  301 PEIFLQQGYG QDCDWWSLGA IMFECLIGWP PFCSENSHET YRKIINWRET LTFPNDIHLS 360
  361 IEARDLMDRL MTDSEHRLGR GGAIEIMQHP FFTGIDWDHI RETAAPFIPN LKSITDTHYF 420
  421 PVDELEQVPE QPVTQQPASV DPQTLEQTNL AFLGYTYKKF NYLTMKGAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.522879
Match:	2f2uA
Description:	No description for 2f2uA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits