YRC Public Data Repository - Protein Structure Prediction

Protein:	nxt2
Organism:	Schizosaccharomyces pombe
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nxt2.

Description	E-value	Query Range	Subject Range
gi\|125562321 - gi\|125562321\|gb\|EAZ07769.1\| hypothetical protein OsI_30022 [Oryza sativa Indica Group] NTF2_ORYSA - Nuclear transport factor 2 (NTF-2) - Oryza sativa (Rice) NTF2_ORYSJ - Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1	168.0	[0..3]	[123..2]
gi\|25310685, gi\|... - gi\|9802547\|gb\|AAF99749.1\|AC004557_28 F17L21.10 [Arabidopsis thaliana], pir\|\|H86398 protein F17L21.10...	162.0	[0..3]	[123..2]
gi\|223640932, gi... - gi\|241949743\|ref\|XP_002417594.1\| nuclear transport factor 2, putative [Candida dubliniensis CD36], g... NTF2_CANAX - Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1	160.0	[0..2]	[122..3]
NTF2_EMENI - Nuclear transport factor 2 OS=Emericella nidulans GN=ntf2 PE=3 SV=1 NTF2_EMENI - Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 1...	159.0	[0..1]	[122..1]
gi\|94403170, gi\|... - gi\|94404128\|ref\|XP_988895.1\| PREDICTED: similar to Nuclear transport factor 2 (NTF-2) [Mus musculus]...	159.0	[0..1]	[120..1]
NTF2_DEBHA - Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0... NTF2_DEBHA - Nuclear transport factor 2 OS=Debaryomyces hansenii GN=NTF2 PE=3 SV=1	158.0	[0..2]	[122..3]
NTF2_CANGA - Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / ... NTF2_CANGA - Nuclear transport factor 2 OS=Candida glabrata GN=NTF2 PE=3 SV=1	157.0	[0..3]	[122..4]
ORFP:6054 - YER009W, Contig c425 25784-26161 gi\|190405570 - gi\|190405570\|gb\|EDV08837.1\| nuclear transport factor [Saccharomyces cerevisiae RM11-1a] NTF2_YEAST - Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NTF2 PE=1 SV=... NTF2 - Nuclear envelope protein, interacts with GDP-bound Gsp1p and with proteins of the nuclear pore to tr... gi\|151944717 - gi\|151944717\|gb\|EDN62976.1\| nuclear transport factor [Saccharomyces cerevisiae YJM789]	157.0	[0..3]	[122..4]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADYNALATQ FTQFYYQTFD SDRSQLSSLY REESMLSFEG AQLQGTKAIV EKLVSLPFQR  60
   61 VQHRISTLDA QPTGTTGSVI VMVTGELLLD EEQMAQRYSQ VFHLVNNNGN YYVLNDLFRL 120
  121 NYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.045757
Match:	1gy7A
Description:	Nuclear transport factor-2 (NTF2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits