| Protein: | upf2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1049 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for upf2.
| Description | E-value | Query Range |
Subject Range |
|
|
1048.0 | [0..10] | [1049..3] |
|
|
1039.0 | [0..10] | [1049..3] |
|
|
1028.0 | [0..10] | [1049..3] |
|
|
1007.0 | [0..22] | [1049..42] |
|
|
987.0 | [0..10] | [1049..3] |
|
|
983.0 | [0..20] | [1049..8] |
|
|
972.0 | [0..16] | [1049..24] |
|
|
944.0 | [0..9] | [1049..2] |
|
|
937.0 | [0..3] | [1047..290] |
|
|
919.0 | [0..3] | [1047..113] |
|
Region A: Residues: [1-430] |
1 11 21 31 41 51
| | | | | |
1 MSREEQIKKL NQYLDNRELA FRAKDGDKNI FHTESQLDSS LKKNTAFMKR CKSSLTSENY 60
61 DSFIKEIKTL SLKKFIPEIT AAIVEGMMKC KATKDILSSV KIVWALNLRF STAFTGPMLA 120
121 NLYCALYPNP GYSLCHESYF ELKQNENEVS EKDRSSHLLK VRPLLRFLIE FWLNGVVGTP 180
181 EDFVSYLPST DSNDKKFRKP WFEEQNLKKP LVVLLFNDLM DTRFGFLLLP VLTSLVRTFS 240
241 CELFTTEDFE DKETLELVNR LNPVVWRTYL RKSLNSYVDK LEVYCQKRKS LFEELNKQYQ 300
301 EQSIIRADPN NEKFQRLANF SKSIESEFSS YASLSEVLNR KASEDLLELN FMEKASSGTN 360
361 SVFNASGERS ESANVETAQV WDDREQYFFY EVFPNFNEGS IAEMKSSIYE SSQEGIRSSS 420
421 ENNKKEDDLK
|
| Detection Method: |  |
| Confidence: | 1.18 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.34835981020148 | bayes_pls_golite062009 |
| protein binding | 0.591747388847465 | bayes_pls_golite062009 |
|
Region A: Residues: [431-643] |
1 11 21 31 41 51
| | | | | |
1 DSTGDLNTTQ VSSRVDNFLL KLPSMVSLEL TNEMALEFYD LNTKASRNRL IKALCTIPRT 60
61 SSFLVPYYVR LARILSQLSS EFSTSLVDHA RHSFKRMIHR KAKHEYDTRL LIVRYISELT 120
121 KFQLMPFHMV FECYKLCINE FTPFDLEVLA LLLESCGRFL LRYPETKLQM QSFLEAIQKK 180
181 KLASALASQD QLVLENALHF VNPPKRGIIV SKK
|
| Detection Method: | |
| Confidence: | 48.09691 |
| Match: | 1hu3A |
| Description: | Eukaryotic initiation factor eIF4G |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.11573661150436 | bayes_pls_golite062009 |
| binding | 1.83406697369076 | bayes_pls_golite062009 |
| protein binding | 1.04044934052933 | bayes_pls_golite062009 |
| nucleic acid binding | 0.967597910409065 | bayes_pls_golite062009 |
| mRNA binding | 0.73831124805124 | bayes_pls_golite062009 |
| hydrolase activity | 0.0579816100130538 | bayes_pls_golite062009 |
| transcription regulator activity | 0.022274123463527 | bayes_pls_golite062009 |
|
Region A: Residues: [644-882] |
1 11 21 31 41 51
| | | | | |
1 KSLKEEFLYD LIQIRLKDDN VFPTLLLLRK FDWKDDYQIL YNTIMEVWNI KYNSLNALAR 60
61 LLSALYKFHP EFCIHVIDDT LESLFSAVNN SDHVEKQKRL AQARFISELC VIHMLDVRAI 120
121 TNFLFHLLPL EKFESFLTMK ASTLTNINND MFRLRLIVVV LQTCGPSIIR SKTKKTMLTY 180
181 LLAYQCYFLI QPEMPLDMLY EFEDVIGYVR PSMKVYMHYE EARNALTERL QAISDDWEE
|
| Detection Method: | |
| Confidence: | 76.522879 |
| Match: | 1uw4B |
| Description: | The structural basis of the interaction between nonsense mediated decay factors UPF2 and UPF3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.11573661150436 | bayes_pls_golite062009 |
| binding | 1.83406697369076 | bayes_pls_golite062009 |
| protein binding | 1.04044934052933 | bayes_pls_golite062009 |
| nucleic acid binding | 0.967597910409065 | bayes_pls_golite062009 |
| mRNA binding | 0.73831124805124 | bayes_pls_golite062009 |
| hydrolase activity | 0.0579816100130538 | bayes_pls_golite062009 |
| transcription regulator activity | 0.022274123463527 | bayes_pls_golite062009 |
|
Region A: Residues: [883-1049] |
1 11 21 31 41 51
| | | | | |
1 DDTRPVFQGA NDGDISSNEE SVYLPEDISD ESETDEESSG LEESDLLDSE DEDIDNEMQL 60
61 SRELDEEFER LTNESLLTRM HEKNPGFDVP LPLRASSLGS PYVTRNEESA SESSHVMFTL 120
121 LTKRGNKQRS QYLEIPSHSS LVRSTKNQQT EEIMERKRVK EMVLNFE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
