YRC Public Data Repository - Protein Structure Prediction

Protein:	nif1
Organism:	Schizosaccharomyces pombe
Length:	681 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nif1.

Description	E-value	Query Range	Subject Range
gi\|69255787, gi\|... - gi\|69255787\|ref\|ZP_00605529.1\| Sel1-like repeat [Magnetococcus sp. MC-1], gi\|68248152\|gb\|EAN30235.1\|...	346.0	[0..336]	[680..275]
gi\|84375186, gi\|... - gi\|84394204\|ref\|ZP_00992934.1\| hypothetical protein V12B01_19651 [Vibrio splendidus 12B01], gi\|84375...	340.0	[0..368]	[680..114]
gi\|53732839 - gi\|53732839\|ref\|ZP_00349593.1\| COG0790: FOG: TPR repeat, SEL1 subfamily [Haemophilus influenzae R284...	332.0	[0..375]	[681..19]
gi\|78172090, gi\|... - gi\|78189891\|ref\|YP_380229.1\| Sel1 repeat-containing protein [Chlorobium chlorochromatii CaD3], gi\|78...	316.0	[0..308]	[680..24]
gi\|88934891, gi\|... - gi\|88934891\|ref\|ZP_01140530.1\| Sel1-like repeat [Geobacter uraniumreducens Rf4], gi\|88918355\|gb\|EAR3...	312.0	[0..379]	[681..51]
gi\|26247143, gi\|... - gi\|26247143\|ref\|NP_753183.1\| hypothetical protein c1269 [Escherichia coli CFT073], gi\|26107544\|gb\|AA... gi\|227835005, gi... - gi\|227888009\|ref\|ZP_04005814.1\| Sel1 family repeat-containing serine/threonine protein kinase [Esche... gi\|47600612 - gi\|47600612\|emb\|CAE55733.1\| hypothetical protein [Escherichia coli Nissle 1917] gi\|47600612 - gi\|47600612\|emb\|CAE55733.1\| hypothetical protein [Escherichia coli Nissle 1917]	302.0	[0..386]	[680..61]
gi\|91210161, gi\|... - gi\|91210161\|ref\|YP_540147.1\| hypothetical protein UTI89_C1133 [Escherichia coli UTI89], gi\|91071735\|...	302.0	[0..386]	[680..61]
gi\|53753948, gi\|... - gi\|54294116\|ref\|YP_126531.1\| hypothetical protein lpl1180 [Legionella pneumophila str. Lens], gi\|537...	296.0	[0..348]	[681..26]
gi\|53750914, gi\|... - gi\|54297129\|ref\|YP_123498.1\| hypothetical protein lpp1174 [Legionella pneumophila str. Paris], gi\|53...	295.0	[0..348]	[681..26]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METMQSRTYA GLTKLNTTTA LLNKKDGNDD DKAEHSKRSG YHGLSPLDAL ALKHRDLNRK  60
   61 LNLRAMMSKS EDNLQILKET TSGSSSDLLN IESPASPAEA SSPFTVRTPT VHDPEHYFVA 120
  121 QKLSSVFGTP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [131-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLEDETDFFD YFSAAPDVHP NDIFDSYNSN NIAESFDDDN YYNSLLPPNA PYYHEIEPPR  60
   61 TASNTSPTPN SIKSAHPAEP PKRPAFTRSA TSPDKILPTR IKSKDTVSSG DSTPLSGSSS 120
  121 SKGMLMSMST SENHSLSSNP ELSNSNLLAK NESPADVSNN ESGNESSKEP DKEHSTPIHP 180
  181 TTPVSRCARP SSRQQTISIL QAQSPFLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [339-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSDKERANLN KTMVSINKSI NIHQSIHEIS CPHHSSSDNC LFILISLMDR LHSPVLKQLD  60
   61 VSLQSLTMTA IRYIDLNYVD VQYTNLRGGA YGNG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.842	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

Predicted Domain #4

Region A:
Residues: [433-681]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNSESSDNAQ LKKEEHLNLA IHFHLLNDHD KCFWHTGMAS SYEDYTATFI YGLYLRHGLA  60
   61 CSPKTHVSFL FLLKTATQLL NKLVECLHSS DLGLNDTTPN EKLSTEYNQQ RLLLALILYE 120
  121 LGVCFMHGWG ITRDRYLALH LIKLSGAWGD ADAQFEAGLQ MSLGAVSDKD SHMAAYYYRL 180
  181 AGFQGISPPS KCKWVYKSKY SLAANHKVPA ASEVAYVSAI VENLESHSLK FSTKPKAKLR 240
  241 SLITSVRYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.045757
Match:	1ouvA
Description:	Helicobacter cysteine rich protein C (HcpC)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits