| Protein: | nif1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 681 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nif1.
| Description | E-value | Query Range |
Subject Range |
|
|
346.0 | [0..336] | [680..275] |
|
|
340.0 | [0..368] | [680..114] |
|
|
332.0 | [0..375] | [681..19] |
|
|
316.0 | [0..308] | [680..24] |
|
|
312.0 | [0..379] | [681..51] |
|
|
302.0 | [0..386] | [680..61] |
|
|
302.0 | [0..386] | [680..61] |
|
|
296.0 | [0..348] | [681..26] |
|
|
295.0 | [0..348] | [681..26] |
|
Region A: Residues: [1-130] |
1 11 21 31 41 51
| | | | | |
1 METMQSRTYA GLTKLNTTTA LLNKKDGNDD DKAEHSKRSG YHGLSPLDAL ALKHRDLNRK 60
61 LNLRAMMSKS EDNLQILKET TSGSSSDLLN IESPASPAEA SSPFTVRTPT VHDPEHYFVA 120
121 QKLSSVFGTP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.464 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.464 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.461 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.451 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.445 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.445 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.397 | d.113.1 | Nudix |
| View | Download | 0.397 | d.113.1 | Nudix |
| View | Download | 0.376 | a.24.3 | Cytochromes |
| View | Download | 0.376 | a.24.3 | Cytochromes |
| View | Download | 0.248 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.234 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.211 | a.23.2 | Diol dehydratase, gamma subunit |
|
Region A: Residues: [131-338] |
1 11 21 31 41 51
| | | | | |
1 DLEDETDFFD YFSAAPDVHP NDIFDSYNSN NIAESFDDDN YYNSLLPPNA PYYHEIEPPR 60
61 TASNTSPTPN SIKSAHPAEP PKRPAFTRSA TSPDKILPTR IKSKDTVSSG DSTPLSGSSS 120
121 SKGMLMSMST SENHSLSSNP ELSNSNLLAK NESPADVSNN ESGNESSKEP DKEHSTPIHP 180
181 TTPVSRCARP SSRQQTISIL QAQSPFLK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [339-432] |
1 11 21 31 41 51
| | | | | |
1 KSDKERANLN KTMVSINKSI NIHQSIHEIS CPHHSSSDNC LFILISLMDR LHSPVLKQLD 60
61 VSLQSLTMTA IRYIDLNYVD VQYTNLRGGA YGNG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.842 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.842 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.696 | a.24.28 | Description not found. |
| View | Download | 0.696 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.639 | d.52.8 | Description not found. |
| View | Download | 0.544 | a.29.8 | Description not found. |
| View | Download | 0.532 | a.77.1 | DEATH domain |
| View | Download | 0.516 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.475 | d.68.7 | R3H domain |
| View | Download | 0.458 | a.4.12 | TrpR-like |
| View | Download | 0.432 | a.112.1 | Description not found. |
| View | Download | 0.428 | a.4.12 | TrpR-like |
| View | Download | 0.390 | d.52.8 | Description not found. |
| View | Download | 0.374 | d.52.8 | Description not found. |
|
Region A: Residues: [433-681] |
1 11 21 31 41 51
| | | | | |
1 NNSESSDNAQ LKKEEHLNLA IHFHLLNDHD KCFWHTGMAS SYEDYTATFI YGLYLRHGLA 60
61 CSPKTHVSFL FLLKTATQLL NKLVECLHSS DLGLNDTTPN EKLSTEYNQQ RLLLALILYE 120
121 LGVCFMHGWG ITRDRYLALH LIKLSGAWGD ADAQFEAGLQ MSLGAVSDKD SHMAAYYYRL 180
181 AGFQGISPPS KCKWVYKSKY SLAANHKVPA ASEVAYVSAI VENLESHSLK FSTKPKAKLR 240
241 SLITSVRYL
|
| Detection Method: | |
| Confidence: | 63.045757 |
| Match: | 1ouvA |
| Description: | Helicobacter cysteine rich protein C (HcpC) |
Matching Structure (courtesy of the PDB): |
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